| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is 28377024
Identifier: 28377024
GI number: 28377024
Start: 60505
End: 61350
Strand: Direct
Name: 28377024
Synonym: lp_0061
Alternate gene names: NA
Gene position: 60505-61350 (Clockwise)
Preceding gene: 28377023
Following gene: 28377025
Centisome position: 1.83
GC content: 46.34
Gene sequence:
>846_bases ATGGCAAGTTTTATTGCAAGTGATCAGGATGTTAAGAACTTTTTGACAGCACCAAGCATGAATGACCAGGAAGGTATTGG GTTTGCTTATGCCACTGACGAAGCGGTGCTTAAGGCTTTAATTCCAGCACCATTAAAATTAATGGCACCGGTGGTTTGCG GTTATGTCGTTCATATGGGAAAACCGACTTTTAGTGCCCCATACCTTGAAGAAAGCCTATTTGCGTTAGTTAGCTACAAG GATAAAATGATGGGCGCTTACCCGATTAACCTCTTACTCCACGGTCCCGGGGCGGAGAGTGGTGTGATTGCAGGTCGGGA AGGTGCTGGGATTCCTAAGAAATTAGCGGATGACATCGAATTGCGCCGGAATGACAACAGTGCGACAGCCACGGTCGAAC GCCATGGCAAGACATTACTGAACGTTTCGTGGACGGCCGGTGAACTGAATGATCCGTCAATTATGAAACAATTTGCGGGG CAGCTCGCGTTAGGTAAGGAAGCCGAAATGAATAGTTTCTTCTATAAATATGACATTGATCAACATGAAGATGGGACGAA CCATTTCAGTAACGTCCAATTAGTTGCGACTCAGTTACGGTCCTTAGCTGATCAAGTTGAACCTGGGAACCTAAGTATTC AGTTGGAGTCAACCGATGATGATCCATTTGGCGAATTGAAGGTCTTGAAGCCACTCGGTGCCGCTTGGTTCCACTTCGAC ACGTCAGTTATGTTCAACACACTGAAGTTGGACGAAGTTGATGCTGCGACAACAATGCCAAAGCTCTTAACGGGTCGGTA TGACCGGAGTTTCTTCAATCCCAAGGCAGCGACTTACATTATTTAG
Upstream 100 bases:
>100_bases GAAGACCGAGTTAAACGGATCGTGACGGATGGCGCACCAGACGTGCACATCATGGACGGTATCATGTAAGCTAATCACGC AAACAAAGGAGTGTTTTACC
Downstream 100 bases:
>100_bases GCGGATTACGAAAGCGAGGAATAGCTGATGTCAGAAGCAGTAAAAAATTTGGTGAACAATGATTTAGCAGACGTAATGTT TAACCGCCATTCAGTTCGGC
Product: acetoacetate decarboxylase (putative)
Products: NA
Alternate protein names: NADHFlavin Oxidoreductase/NADH Oxidase
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MASFIASDQDVKNFLTAPSMNDQEGIGFAYATDEAVLKALIPAPLKLMAPVVCGYVVHMGKPTFSAPYLEESLFALVSYK DKMMGAYPINLLLHGPGAESGVIAGREGAGIPKKLADDIELRRNDNSATATVERHGKTLLNVSWTAGELNDPSIMKQFAG QLALGKEAEMNSFFYKYDIDQHEDGTNHFSNVQLVATQLRSLADQVEPGNLSIQLESTDDDPFGELKVLKPLGAAWFHFD TSVMFNTLKLDEVDAATTMPKLLTGRYDRSFFNPKAATYII
Sequences:
>Translated_281_residues MASFIASDQDVKNFLTAPSMNDQEGIGFAYATDEAVLKALIPAPLKLMAPVVCGYVVHMGKPTFSAPYLEESLFALVSYK DKMMGAYPINLLLHGPGAESGVIAGREGAGIPKKLADDIELRRNDNSATATVERHGKTLLNVSWTAGELNDPSIMKQFAG QLALGKEAEMNSFFYKYDIDQHEDGTNHFSNVQLVATQLRSLADQVEPGNLSIQLESTDDDPFGELKVLKPLGAAWFHFD TSVMFNTLKLDEVDAATTMPKLLTGRYDRSFFNPKAATYII >Mature_280_residues ASFIASDQDVKNFLTAPSMNDQEGIGFAYATDEAVLKALIPAPLKLMAPVVCGYVVHMGKPTFSAPYLEESLFALVSYKD KMMGAYPINLLLHGPGAESGVIAGREGAGIPKKLADDIELRRNDNSATATVERHGKTLLNVSWTAGELNDPSIMKQFAGQ LALGKEAEMNSFFYKYDIDQHEDGTNHFSNVQLVATQLRSLADQVEPGNLSIQLESTDDDPFGELKVLKPLGAAWFHFDT SVMFNTLKLDEVDAATTMPKLLTGRYDRSFFNPKAATYII
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30748; Mature: 30617
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASFIASDQDVKNFLTAPSMNDQEGIGFAYATDEAVLKALIPAPLKLMAPVVCGYVVHMG CCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHCC KPTFSAPYLEESLFALVSYKDKMMGAYPINLLLHGPGAESGVIAGREGAGIPKKLADDIE CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEECCCCCCCCHHHHHHHH LRRNDNSATATVERHGKTLLNVSWTAGELNDPSIMKQFAGQLALGKEAEMNSFFYKYDID EECCCCCCEEEHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCC QHEDGTNHFSNVQLVATQLRSLADQVEPGNLSIQLESTDDDPFGELKVLKPLGAAWFHFD CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCCCCHHEEEC TSVMFNTLKLDEVDAATTMPKLLTGRYDRSFFNPKAATYII HHHHEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEC >Mature Secondary Structure ASFIASDQDVKNFLTAPSMNDQEGIGFAYATDEAVLKALIPAPLKLMAPVVCGYVVHMG CCCCCCCHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHCC KPTFSAPYLEESLFALVSYKDKMMGAYPINLLLHGPGAESGVIAGREGAGIPKKLADDIE CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEECCCCCCCCHHHHHHHH LRRNDNSATATVERHGKTLLNVSWTAGELNDPSIMKQFAGQLALGKEAEMNSFFYKYDID EECCCCCCEEEHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCC QHEDGTNHFSNVQLVATQLRSLADQVEPGNLSIQLESTDDDPFGELKVLKPLGAAWFHFD CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCCCCHHEEEC TSVMFNTLKLDEVDAATTMPKLLTGRYDRSFFNPKAATYII HHHHEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA