BacMap

Definition	Lactobacillus plantarum WCFS1, complete genome.
Accession	NC_004567
Length	3,308,274

Click here to switch to the map view.

The map label for this gene is yxjF [H]

Identifier: 28377023

GI number: 28377023

Start: 59613

End: 60473

Strand: Direct

Name: yxjF [H]

Synonym: lp_0060

Alternate gene names: 28377023

Gene position: 59613-60473 (Clockwise)

Preceding gene: 28377022

Following gene: 28377024

Centisome position: 1.8

GC content: 46.69

Gene sequence:

>861_bases
ATGAAAGATTTTAAAGATAAAGTTATGTTTATCACGGGTGCGGCCCACGGATTTGGTCAAGTTATTGCTGAAGGCGCCGC
GGATCGGGGTATGAAGCTCACGATTGTTGATATCGACGAACCAGCTTTGAAGAAAACGTACCAACATATTCTCGACAAGG
GTGCCGAGGTGTTGATGGTTACCGCTGACGTTACAAAGGAAGCTAGTGTCGACGATGCGGTTGAGCAGGCCATGGAAAAG
TTTGGGCGGATCGACCTACTGATTAATAATGCCGGGATCGCGCTACCTGGCCGAATTTGGGAATTGCCGACTCGTGATTG
GGAATGGATCATGCATATCAACTTAATGAGTCAAGTTTATGCGATGAAGCGCGTTATCCCAATTATGATTCAACAGAAGA
CCCATGCGGATATTCTTAACGTGGCTTCGATTGCCGGCTTAGTTGATACGCCCGGAATGCCTTCTTATCATGCTAGCAAG
TTCGCTTCTGTTGGGATGACTGAAGCGACCGCCTATGACTTACAACGGGCTAATATTGATATCGACATGCACGTGATGTG
CCCTGGCTTTGTTCAGACGGATCTCTATCACACTGAAAATCACCGGCCAGCGCAATACAGCGACCCAACGGACCCGTATT
ATCAAAGTGAAGCGTACTTAAAGGGACAACAATTTGCGAAGTATGTCATTACCAACGGGAAACCAATTGATACGATTGCC
GATACCGTCTTTAAAGCCTTAGAGGATAACCGTTTCTACATTTTGACCCATCCAGAATATAATCCACTGATTGAAGACCG
AGTTAAACGGATCGTGACGGATGGCGCACCAGACGTGCACATCATGGACGGTATCATGTAA

Upstream 100 bases:

>100_bases
TAATATGAAAGCGTAGTCAAGATAAATGACCGGTCATCAGGTTAATGTTTACTGATAAGTTAATAAAATCACAATTTCAT
CGAGGAGGACGCAAAACATC

Downstream 100 bases:

>100_bases
GCTAATCACGCAAACAAAGGAGTGTTTTACCATGGCAAGTTTTATTGCAAGTGATCAGGATGTTAAGAACTTTTTGACAG
CACCAAGCATGAATGACCAG

Product: short-chain dehydrogenase/oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKDFKDKVMFITGAAHGFGQVIAEGAADRGMKLTIVDIDEPALKKTYQHILDKGAEVLMVTADVTKEASVDDAVEQAMEK
FGRIDLLINNAGIALPGRIWELPTRDWEWIMHINLMSQVYAMKRVIPIMIQQKTHADILNVASIAGLVDTPGMPSYHASK
FASVGMTEATAYDLQRANIDIDMHVMCPGFVQTDLYHTENHRPAQYSDPTDPYYQSEAYLKGQQFAKYVITNGKPIDTIA
DTVFKALEDNRFYILTHPEYNPLIEDRVKRIVTDGAPDVHIMDGIM

Sequences:

>Translated_286_residues
MKDFKDKVMFITGAAHGFGQVIAEGAADRGMKLTIVDIDEPALKKTYQHILDKGAEVLMVTADVTKEASVDDAVEQAMEK
FGRIDLLINNAGIALPGRIWELPTRDWEWIMHINLMSQVYAMKRVIPIMIQQKTHADILNVASIAGLVDTPGMPSYHASK
FASVGMTEATAYDLQRANIDIDMHVMCPGFVQTDLYHTENHRPAQYSDPTDPYYQSEAYLKGQQFAKYVITNGKPIDTIA
DTVFKALEDNRFYILTHPEYNPLIEDRVKRIVTDGAPDVHIMDGIM
>Mature_286_residues
MKDFKDKVMFITGAAHGFGQVIAEGAADRGMKLTIVDIDEPALKKTYQHILDKGAEVLMVTADVTKEASVDDAVEQAMEK
FGRIDLLINNAGIALPGRIWELPTRDWEWIMHINLMSQVYAMKRVIPIMIQQKTHADILNVASIAGLVDTPGMPSYHASK
FASVGMTEATAYDLQRANIDIDMHVMCPGFVQTDLYHTENHRPAQYSDPTDPYYQSEAYLKGQQFAKYVITNGKPIDTIA
DTVFKALEDNRFYILTHPEYNPLIEDRVKRIVTDGAPDVHIMDGIM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=190, Percent_Identity=33.1578947368421, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=30.9644670050761, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI4503817, Length=226, Percent_Identity=30.0884955752212, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI142976729, Length=195, Percent_Identity=27.6923076923077, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI40807363, Length=218, Percent_Identity=26.605504587156, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI25282469, Length=249, Percent_Identity=28.1124497991968, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI4758504, Length=224, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI210032110, Length=204, Percent_Identity=26.4705882352941, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI310128830, Length=205, Percent_Identity=25.3658536585366, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI310115468, Length=205, Percent_Identity=25.3658536585366, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=27.8606965174129, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=31.7647058823529, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI7706318, Length=197, Percent_Identity=27.4111675126904, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI83715985, Length=185, Percent_Identity=30.2702702702703, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI59889578, Length=224, Percent_Identity=26.3392857142857, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI15277342, Length=202, Percent_Identity=23.2673267326733, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI150247226, Length=230, Percent_Identity=27.3913043478261, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI66933014, Length=168, Percent_Identity=29.7619047619048, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI22507405, Length=201, Percent_Identity=26.3681592039801, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=23.8095238095238, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI5031737, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4504505, Length=188, Percent_Identity=25.531914893617, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI19743808, Length=226, Percent_Identity=27.4336283185841, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=26.9430051813472, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI40254986, Length=141, Percent_Identity=34.0425531914894, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI109715829, Length=242, Percent_Identity=21.900826446281, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI157739938, Length=201, Percent_Identity=25.8706467661692, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87082100, Length=213, Percent_Identity=33.8028169014084, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1787335, Length=193, Percent_Identity=28.4974093264249, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1789208, Length=192, Percent_Identity=29.6875, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI87082160, Length=205, Percent_Identity=28.2926829268293, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789057, Length=186, Percent_Identity=28.494623655914, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790717, Length=189, Percent_Identity=26.984126984127, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788459, Length=262, Percent_Identity=24.0458015267176, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787905, Length=188, Percent_Identity=29.2553191489362, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787820, Length=156, Percent_Identity=27.5641025641026, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786812, Length=196, Percent_Identity=28.0612244897959, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=31.6981132075472, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17538486, Length=257, Percent_Identity=31.9066147859922, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI193203115, Length=195, Percent_Identity=26.1538461538462, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17564282, Length=197, Percent_Identity=26.3959390862944, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI193203117, Length=190, Percent_Identity=25.7894736842105, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=31.8181818181818, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=30.0751879699248, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=224, Percent_Identity=30.8035714285714, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=203, Percent_Identity=31.0344827586207, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=203, Percent_Identity=29.064039408867, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=212, Percent_Identity=31.6037735849057, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=24.4897959183673, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=201, Percent_Identity=32.3383084577114, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=201, Percent_Identity=31.8407960199005, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=29.277566539924, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17538480, Length=205, Percent_Identity=30.2439024390244, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71994600, Length=204, Percent_Identity=26.9607843137255, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=198, Percent_Identity=29.2929292929293, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=202, Percent_Identity=31.6831683168317, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=203, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=215, Percent_Identity=27.906976744186, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=201, Percent_Identity=29.3532338308458, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=194, Percent_Identity=25.7731958762887, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=218, Percent_Identity=27.9816513761468, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=203, Percent_Identity=30.0492610837438, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=190, Percent_Identity=23.6842105263158, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=206, Percent_Identity=28.1553398058252, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=199, Percent_Identity=30.1507537688442, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=29.1187739463602, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=204, Percent_Identity=25, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=208, Percent_Identity=25.4807692307692, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI32563809, Length=208, Percent_Identity=25.4807692307692, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=188, Percent_Identity=30.8510638297872, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=31.8181818181818, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571526, Length=197, Percent_Identity=36.0406091370558, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=33.8461538461538, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI21357041, Length=236, Percent_Identity=33.0508474576271, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24581726, Length=198, Percent_Identity=30.3030303030303, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI17737361, Length=223, Percent_Identity=28.2511210762332, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI221510726, Length=212, Percent_Identity=30.188679245283, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24644339, Length=195, Percent_Identity=27.6923076923077, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI281364892, Length=178, Percent_Identity=30.8988764044944, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28571387, Length=206, Percent_Identity=28.1553398058252, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24639444, Length=191, Percent_Identity=27.7486910994764, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24640492, Length=204, Percent_Identity=25, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21355631, Length=181, Percent_Identity=28.1767955801105, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21355319, Length=212, Percent_Identity=26.8867924528302, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641232, Length=203, Percent_Identity=25.1231527093596, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24644337, Length=207, Percent_Identity=28.9855072463768, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364494, Length=212, Percent_Identity=25.9433962264151, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI18859837, Length=185, Percent_Identity=25.9459459459459, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24649181, Length=199, Percent_Identity=25.6281407035176, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=23.1527093596059, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24648944, Length=206, Percent_Identity=23.7864077669903, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011294
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 32092; Mature: 32092

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDFKDKVMFITGAAHGFGQVIAEGAADRGMKLTIVDIDEPALKKTYQHILDKGAEVLMV
CCCCCCEEEEEEECCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEE
TADVTKEASVDDAVEQAMEKFGRIDLLINNAGIALPGRIWELPTRDWEWIMHINLMSQVY
EECCCCCCCHHHHHHHHHHHHCCEEEEEECCCEECCCCEEECCCCCCEEEEEHHHHHHHH
AMKRVIPIMIQQKTHADILNVASIAGLVDTPGMPSYHASKFASVGMTEATAYDLQRANID
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCC
IDMHVMCPGFVQTDLYHTENHRPAQYSDPTDPYYQSEAYLKGQQFAKYVITNGKPIDTIA
EEEEEECCCHHHHCCEECCCCCCCCCCCCCCCCCCCHHHHCHHHHHHEEECCCCCHHHHH
DTVFKALEDNRFYILTHPEYNPLIEDRVKRIVTDGAPDVHIMDGIM
HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCC
>Mature Secondary Structure
MKDFKDKVMFITGAAHGFGQVIAEGAADRGMKLTIVDIDEPALKKTYQHILDKGAEVLMV
CCCCCCEEEEEEECCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEE
TADVTKEASVDDAVEQAMEKFGRIDLLINNAGIALPGRIWELPTRDWEWIMHINLMSQVY
EECCCCCCCHHHHHHHHHHHHCCEEEEEECCCEECCCCEEECCCCCCEEEEEHHHHHHHH
AMKRVIPIMIQQKTHADILNVASIAGLVDTPGMPSYHASKFASVGMTEATAYDLQRANID
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCC
IDMHVMCPGFVQTDLYHTENHRPAQYSDPTDPYYQSEAYLKGQQFAKYVITNGKPIDTIA
EEEEEECCCHHHHCCEECCCCCCCCCCCCCCCCCCCHHHHCHHHHHHEEECCCCCHHHHH
DTVFKALEDNRFYILTHPEYNPLIEDRVKRIVTDGAPDVHIMDGIM
HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]