| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is 28211981
Identifier: 28211981
GI number: 28211981
Start: 2525842
End: 2527218
Strand: Direct
Name: 28211981
Synonym: CTC02390
Alternate gene names: NA
Gene position: 2525842-2527218 (Clockwise)
Preceding gene: 28211977
Following gene: 28212001
Centisome position: 90.23
GC content: 22.95
Gene sequence:
>1377_bases TTGAAATATATAGGTCCCTTTTTAAGATTAAACAATTTGGATAAAACAAACATAAAAAATCAATTATTTCATCTATCTAA AGAATCTATAAAACATATATCTTTTTATTCTAAATGTGGAATTCTTTTAAACTCTCAAGAATTAAAAGTTAAAGATTATG GCGTAAATTCACTAAAACATCCTTATCCAATGTTATCAGTATACAGGAAAGCATCTCCTAAACTTAAAAATATTAATAAT AATTATTATTGGTCTGCTGAAAAAGTAAAAAAAGATATTATTATATCTAGCAATGCTTTTATGACACTTTCACTATTGGA ATTAAGTGATTATTACTTTAACTTTAAAAATTTAGATGAAGAAAAGTATAATTTTTCAAATATGTATAGAGCACTAGCAA GAAAACAACTTCAGTTTTACGCTACTTATATGAGAACTGAAGAAGGAGTTTTTATAGATAAAAAAGATGTATCTGAAACA CCACTAAAAGATCTAAAGCTAGAAATTAAAAATCCTGATTTTAATTTTTCTGATCAGGCTTTATTAATGTGCGCTTTTTA TAAATCTTGTTTAAGCCACACAAAATCTGATAATGATATATATAAAGACTTTTCATTAGATATATTAAATATGTTAATTG AATTTAAAGATGAGTTGTATTCAACCTCTTTAGAAGACTTAGTTAAAACAACATTAGCATTAAATATATTTTACTCATAT TCTAGGGAAGAATCTGCAAAACTACTTTTAATAGATTTATTTGAATTACTATATGAAAAATATTTTAGTCATTTTAATAT ATCTAGTAGTATAGAATTAGAATATTTATGTCTTTATTATATAAATTCCTACCTTTTATACAAAAATACATTATTTTTAA GATATAAAGATATTCAGGATAAGTTATTCATAGAGATTTTAAACTTTTACAACAATGATTTTGGAATGTTTGTAAAATCC AATGATAAAAAACCTTTTAATTATACTCCATTAGATATATGTCTATATATTAGTTGCCTTTTAATAAATTGCTTTGAAAA AGAGGATACTAAAAACATAGTAATATTAACAAATATATATAAAAAACAGCTTATAGAGTCCGGTATTATATTGAGCTGGC CTGAAGCTCCTAATTTAGATGATAGAGAAAGATACATTAATTTTTCCTTAAAGTCAGAGGATCTTTTAGATGAAAAGAAT TTTAAATTATCTTCTATTATTTCACCTAATGTTTCTGAATTAGCTCCTGTATTCATAAGAAGTGTTAAATATGACGAAAA GAAGAATACTTTTAAACAGGGTAAAGACTCTTTTTATAGTAATAGAAATATACCAATATTTTTTATAATTATTTATTTGT ACAATAATTACCTATAA
Upstream 100 bases:
>100_bases ATTTTATATTGTTTTATTATTTAATTAATTGAGTTTTGTATTATTTATAGTTTATCAAACATATAATTAACAAGAAATAA TTTTAAGTAGGTGTATAGTA
Downstream 100 bases:
>100_bases ATGAAATATGTTATAAAATATTTATTATTTTTCTGCACATAATAAACACAATGCTTATCATGCTAAAGATCTGTAGGAGG TAATACTTATGATGTATATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 458; Mature: 458
Protein sequence:
>458_residues MKYIGPFLRLNNLDKTNIKNQLFHLSKESIKHISFYSKCGILLNSQELKVKDYGVNSLKHPYPMLSVYRKASPKLKNINN NYYWSAEKVKKDIIISSNAFMTLSLLELSDYYFNFKNLDEEKYNFSNMYRALARKQLQFYATYMRTEEGVFIDKKDVSET PLKDLKLEIKNPDFNFSDQALLMCAFYKSCLSHTKSDNDIYKDFSLDILNMLIEFKDELYSTSLEDLVKTTLALNIFYSY SREESAKLLLIDLFELLYEKYFSHFNISSSIELEYLCLYYINSYLLYKNTLFLRYKDIQDKLFIEILNFYNNDFGMFVKS NDKKPFNYTPLDICLYISCLLINCFEKEDTKNIVILTNIYKKQLIESGIILSWPEAPNLDDRERYINFSLKSEDLLDEKN FKLSSIISPNVSELAPVFIRSVKYDEKKNTFKQGKDSFYSNRNIPIFFIIIYLYNNYL
Sequences:
>Translated_458_residues MKYIGPFLRLNNLDKTNIKNQLFHLSKESIKHISFYSKCGILLNSQELKVKDYGVNSLKHPYPMLSVYRKASPKLKNINN NYYWSAEKVKKDIIISSNAFMTLSLLELSDYYFNFKNLDEEKYNFSNMYRALARKQLQFYATYMRTEEGVFIDKKDVSET PLKDLKLEIKNPDFNFSDQALLMCAFYKSCLSHTKSDNDIYKDFSLDILNMLIEFKDELYSTSLEDLVKTTLALNIFYSY SREESAKLLLIDLFELLYEKYFSHFNISSSIELEYLCLYYINSYLLYKNTLFLRYKDIQDKLFIEILNFYNNDFGMFVKS NDKKPFNYTPLDICLYISCLLINCFEKEDTKNIVILTNIYKKQLIESGIILSWPEAPNLDDRERYINFSLKSEDLLDEKN FKLSSIISPNVSELAPVFIRSVKYDEKKNTFKQGKDSFYSNRNIPIFFIIIYLYNNYL >Mature_458_residues MKYIGPFLRLNNLDKTNIKNQLFHLSKESIKHISFYSKCGILLNSQELKVKDYGVNSLKHPYPMLSVYRKASPKLKNINN NYYWSAEKVKKDIIISSNAFMTLSLLELSDYYFNFKNLDEEKYNFSNMYRALARKQLQFYATYMRTEEGVFIDKKDVSET PLKDLKLEIKNPDFNFSDQALLMCAFYKSCLSHTKSDNDIYKDFSLDILNMLIEFKDELYSTSLEDLVKTTLALNIFYSY SREESAKLLLIDLFELLYEKYFSHFNISSSIELEYLCLYYINSYLLYKNTLFLRYKDIQDKLFIEILNFYNNDFGMFVKS NDKKPFNYTPLDICLYISCLLINCFEKEDTKNIVILTNIYKKQLIESGIILSWPEAPNLDDRERYINFSLKSEDLLDEKN FKLSSIISPNVSELAPVFIRSVKYDEKKNTFKQGKDSFYSNRNIPIFFIIIYLYNNYL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54380; Mature: 54380
Theoretical pI: Translated: 7.72; Mature: 7.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYIGPFLRLNNLDKTNIKNQLFHLSKESIKHISFYSKCGILLNSQELKVKDYGVNSLKH CCCCCCHHEECCCCCCHHHHHHHHHCHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCCC PYPMLSVYRKASPKLKNINNNYYWSAEKVKKDIIISSNAFMTLSLLELSDYYFNFKNLDE CCHHHHHHHHCCCCCCCCCCCEEECHHHHCCCEEEECCCEEEEEEEHHHHHHCCCCCCCH EKYNFSNMYRALARKQLQFYATYMRTEEGVFIDKKDVSETPLKDLKLEIKNPDFNFSDQA HHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCHHH LLMCAFYKSCLSHTKSDNDIYKDFSLDILNMLIEFKDELYSTSLEDLVKTTLALNIFYSY HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEC SREESAKLLLIDLFELLYEKYFSHFNISSSIELEYLCLYYINSYLLYKNTLFLRYKDIQD CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEEEEEEEECHHH KLFIEILNFYNNDFGMFVKSNDKKPFNYTPLDICLYISCLLINCFEKEDTKNIVILTNIY HHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH KKQLIESGIILSWPEAPNLDDRERYINFSLKSEDLLDEKNFKLSSIISPNVSELAPVFIR HHHHHHCCCEEECCCCCCCCCHHHEEEEEECCCHHCCCCCCEEEHCCCCCHHHHHHHHHH SVKYDEKKNTFKQGKDSFYSNRNIPIFFIIIYLYNNYL HHCCCHHHHHHHHCCHHHCCCCCCCEEEEEEEHHHCCC >Mature Secondary Structure MKYIGPFLRLNNLDKTNIKNQLFHLSKESIKHISFYSKCGILLNSQELKVKDYGVNSLKH CCCCCCHHEECCCCCCHHHHHHHHHCHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCCC PYPMLSVYRKASPKLKNINNNYYWSAEKVKKDIIISSNAFMTLSLLELSDYYFNFKNLDE CCHHHHHHHHCCCCCCCCCCCEEECHHHHCCCEEEECCCEEEEEEEHHHHHHCCCCCCCH EKYNFSNMYRALARKQLQFYATYMRTEEGVFIDKKDVSETPLKDLKLEIKNPDFNFSDQA HHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCHHH LLMCAFYKSCLSHTKSDNDIYKDFSLDILNMLIEFKDELYSTSLEDLVKTTLALNIFYSY HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEC SREESAKLLLIDLFELLYEKYFSHFNISSSIELEYLCLYYINSYLLYKNTLFLRYKDIQD CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEEEEEEEECHHH KLFIEILNFYNNDFGMFVKSNDKKPFNYTPLDICLYISCLLINCFEKEDTKNIVILTNIY HHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH KKQLIESGIILSWPEAPNLDDRERYINFSLKSEDLLDEKNFKLSSIISPNVSELAPVFIR HHHHHHCCCEEECCCCCCCCCHHHEEEEEECCCHHCCCCCCEEEHCCCCCHHHHHHHHHH SVKYDEKKNTFKQGKDSFYSNRNIPIFFIIIYLYNNYL HHCCCHHHHHHHHCCHHHCCCCCCCEEEEEEEHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA