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The map label for this gene is sdhB [H]

Identifier: 28211606

GI number: 28211606

Start: 2108449

End: 2109135

Strand: Direct

Name: sdhB [H]

Synonym: CTC01981

Alternate gene names: 28211606

Gene position: 2108449-2109135 (Clockwise)

Preceding gene: 28211605

Following gene: 28211607

Centisome position: 75.32

GC content: 32.46

Gene sequence:

>687_bases
ATGAGTAGAAATTTTAGTGTATTCGATATAGTTGGTCCTATAATGATAGGTCCGTCTAGTTCTCACACCGCTGGTGCAGC
AAGACTTGCAAAGCTAGCCGCATCTATTGCTGGTGAAAAAATAAAAAAAGTAGAATTTCAGTTGCATGGTTCCTTTGCCA
AAACATACAAAGGTCATGGAACTGACAAAGCATTAGTTGCTGGAATACTTGGAATGGATCCTTGGGATGATTGCCTAAAA
AACTCTTTTGAAATCGCTAAGGAAAAAGGACTTGATATATCATTTTCTGAAATAGAATTAGAAAATGTTCATCCCAATAC
TGTTAAATTTGTTATTACAAAAGAAGATGATTCTACCTGTAGTGTAATTGGTTCTTCTATAGGTGGCGGAAATATAATTA
TTTTTGATATAGATGGCCAAGAAGTTGAATTTAAAGGAGATTATCCTACTCTAATGACAAAGCATAAAGATACTCCTGGA
GTAATTTCTAAAATTAGTACAATTATGTATAAGGATAATTTAAATATAGGTACCATGAAATTATATAGAAATAGCAAAGG
TTCTATGGCTACCATGGCTTTGGAAACAGATAATGTAATTCCTCAAGCTACTATTGAAAAACTAAAAAAAATTCCAGAAA
TACATAGTATAAAAATAATAAACCCAATGGGGGAAGGAGAGCTTTAA

Upstream 100 bases:

>100_bases
CCTGTGAGAAATTATCATGGGATTTATTTATTTTATAAAATAGTCTATAATATATAATATATTGTAAGCCTATTTATAAA
TCATTAAGGGGGATTTTTTA

Downstream 100 bases:

>100_bases
TTGTTTGTTAATACTGGTTTAGAGTTAATAGATATATGTAAGGAAAAAAATCTAAAAATATGGGAATATGGATTAAATGT
AGAACTTGAAGAAACTGGGG

Product: L-serine dehydratase beta subunit

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSRNFSVFDIVGPIMIGPSSSHTAGAARLAKLAASIAGEKIKKVEFQLHGSFAKTYKGHGTDKALVAGILGMDPWDDCLK
NSFEIAKEKGLDISFSEIELENVHPNTVKFVITKEDDSTCSVIGSSIGGGNIIIFDIDGQEVEFKGDYPTLMTKHKDTPG
VISKISTIMYKDNLNIGTMKLYRNSKGSMATMALETDNVIPQATIEKLKKIPEIHSIKIINPMGEGEL

Sequences:

>Translated_228_residues
MSRNFSVFDIVGPIMIGPSSSHTAGAARLAKLAASIAGEKIKKVEFQLHGSFAKTYKGHGTDKALVAGILGMDPWDDCLK
NSFEIAKEKGLDISFSEIELENVHPNTVKFVITKEDDSTCSVIGSSIGGGNIIIFDIDGQEVEFKGDYPTLMTKHKDTPG
VISKISTIMYKDNLNIGTMKLYRNSKGSMATMALETDNVIPQATIEKLKKIPEIHSIKIINPMGEGEL
>Mature_227_residues
SRNFSVFDIVGPIMIGPSSSHTAGAARLAKLAASIAGEKIKKVEFQLHGSFAKTYKGHGTDKALVAGILGMDPWDDCLKN
SFEIAKEKGLDISFSEIELENVHPNTVKFVITKEDDSTCSVIGSSIGGGNIIIFDIDGQEVEFKGDYPTLMTKHKDTPGV
ISKISTIMYKDNLNIGTMKLYRNSKGSMATMALETDNVIPQATIEKLKKIPEIHSIKIINPMGEGEL

Specific function: Deaminates Also Threonine, Particularly When It Is Present In High Concentration. [C]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004643
- InterPro:   IPR005131 [H]

Pfam domain/function: PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 24749; Mature: 24618

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNFSVFDIVGPIMIGPSSSHTAGAARLAKLAASIAGEKIKKVEFQLHGSFAKTYKGHG
CCCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEEECCHHHHHCCCC
TDKALVAGILGMDPWDDCLKNSFEIAKEKGLDISFSEIELENVHPNTVKFVITKEDDSTC
CCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEHEEEEECCCCCEEEEEEECCCCCEE
SVIGSSIGGGNIIIFDIDGQEVEFKGDYPTLMTKHKDTPGVISKISTIMYKDNLNIGTMK
HEEECCCCCCEEEEEEECCCEEEECCCCCCEEECCCCCCHHHHHHHHHEEECCCCEEEEE
LYRNSKGSMATMALETDNVIPQATIEKLKKIPEIHSIKIINPMGEGEL
EEECCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
SRNFSVFDIVGPIMIGPSSSHTAGAARLAKLAASIAGEKIKKVEFQLHGSFAKTYKGHG
CCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEEECCHHHHHCCCC
TDKALVAGILGMDPWDDCLKNSFEIAKEKGLDISFSEIELENVHPNTVKFVITKEDDSTC
CCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEHEEEEECCCCCEEEEEEECCCCCEE
SVIGSSIGGGNIIIFDIDGQEVEFKGDYPTLMTKHKDTPGVISKISTIMYKDNLNIGTMK
HEEECCCCCCEEEEEEECCCEEEECCCCCCEEECCCCCCHHHHHHHHHEEECCCCEEEEE
LYRNSKGSMATMALETDNVIPQATIEKLKKIPEIHSIKIINPMGEGEL
EEECCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9244285; 2065681 [H]