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The map label for this gene is dppC [H]

Identifier: 28211536

GI number: 28211536

Start: 2023871

End: 2024707

Strand: Direct

Name: dppC [H]

Synonym: CTC01902

Alternate gene names: 28211536

Gene position: 2023871-2024707 (Clockwise)

Preceding gene: 28211535

Following gene: 28211537

Centisome position: 72.3

GC content: 35.72

Gene sequence:

>837_bases
ATGTTTAGAAGACAAAAAGAGATAAATGTACGAAAAAAAATGATAGTACTGCTTGGATTTTCTGCTATGCTTTTGCTATG
TATTCTTATTTTTAGTTTTTTGTTGAGTAATGATAATTTTCGCCTTAGCTCTACTGATAAAAACCTTCCTCCAAGTTTTA
AGCATTTGTTTGGAACAGATTGGCTGGGAAGAGATATGTTTACCAGGACAATCAAAGGGTTGCGTTTATCACTAGCAGTG
GGAGCCTTTGCCTCTATTATAAGCGTTTTTATGGCAACTATTATGGGAATTTGTGCAGCTACTTTTGGTAAAACGCTTGA
TGCTGTTATCTCTTGGTTCATTGATTTATTTATTGGCATGCCTCATTTAGTGTTCATGATACTGATATCATTTATTGTAG
GTGGTGGAATACGTGGAATTGTACTTGCTGTTTCACTTACTCATTGGACATCTTTGGCAAGAATAGTGCGTTCTGAAGTA
CTTCAAATTAGAAATGCAGAATACATCCAGATATCCAAAAGTTACGGAAAATCTTCATGGTATATTGCAAAAAAACATAT
ATTACCTTCCGTTTTTCCTCAAATAATGATCGGATTTCTACTTATGTTTCCCCATGTAATTTTACATGAAGCTGGGCTTA
CTTTTATGGGATTTGGCCTCTCCCCTCAAACTCCCGCTGTAGGCATTATCCTTTCCGAAGCTATGAGTCATATTTCCACC
GGAAAGTGGTGGCTGGTAATTTTTCCAGGGTTACTTTTAGTTATAGTAATTAAGAGCTTTGACAATATTGGGGAGCAACT
ACGTATTTTAATGGAACCTGTTAGTTCCAATGAATAA

Upstream 100 bases:

>100_bases
GGAATTATTCTGATTAGCTCCTTGTTTGTATTTGTAGGCAATTTTATTGCAGATATTTTAAATACAGTTGTAGATCCACG
TATAAAGGGGGATACATTAG

Downstream 100 bases:

>100_bases
GGAGGAACTATAATGAATACCACACAAAAAGAATTATTACTCCAGGTAAAAAACCTAAAAATTAGTTTTTCTCAATACTT
TAAAGGAACACAGAAACGTA

Product: dipeptide transport system permease protein dppC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MFRRQKEINVRKKMIVLLGFSAMLLLCILIFSFLLSNDNFRLSSTDKNLPPSFKHLFGTDWLGRDMFTRTIKGLRLSLAV
GAFASIISVFMATIMGICAATFGKTLDAVISWFIDLFIGMPHLVFMILISFIVGGGIRGIVLAVSLTHWTSLARIVRSEV
LQIRNAEYIQISKSYGKSSWYIAKKHILPSVFPQIMIGFLLMFPHVILHEAGLTFMGFGLSPQTPAVGIILSEAMSHIST
GKWWLVIFPGLLLVIVIKSFDNIGEQLRILMEPVSSNE

Sequences:

>Translated_278_residues
MFRRQKEINVRKKMIVLLGFSAMLLLCILIFSFLLSNDNFRLSSTDKNLPPSFKHLFGTDWLGRDMFTRTIKGLRLSLAV
GAFASIISVFMATIMGICAATFGKTLDAVISWFIDLFIGMPHLVFMILISFIVGGGIRGIVLAVSLTHWTSLARIVRSEV
LQIRNAEYIQISKSYGKSSWYIAKKHILPSVFPQIMIGFLLMFPHVILHEAGLTFMGFGLSPQTPAVGIILSEAMSHIST
GKWWLVIFPGLLLVIVIKSFDNIGEQLRILMEPVSSNE
>Mature_278_residues
MFRRQKEINVRKKMIVLLGFSAMLLLCILIFSFLLSNDNFRLSSTDKNLPPSFKHLFGTDWLGRDMFTRTIKGLRLSLAV
GAFASIISVFMATIMGICAATFGKTLDAVISWFIDLFIGMPHLVFMILISFIVGGGIRGIVLAVSLTHWTSLARIVRSEV
LQIRNAEYIQISKSYGKSSWYIAKKHILPSVFPQIMIGFLLMFPHVILHEAGLTFMGFGLSPQTPAVGIILSEAMSHIST
GKWWLVIFPGLLLVIVIKSFDNIGEQLRILMEPVSSNE

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=266, Percent_Identity=28.9473684210526, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787760, Length=257, Percent_Identity=27.6264591439689, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1789889, Length=226, Percent_Identity=29.646017699115, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787498, Length=261, Percent_Identity=29.1187739463602, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789964, Length=222, Percent_Identity=31.981981981982, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1788505, Length=228, Percent_Identity=29.8245614035088, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787549, Length=280, Percent_Identity=24.2857142857143, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31100; Mature: 31100

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRRQKEINVRKKMIVLLGFSAMLLLCILIFSFLLSNDNFRLSSTDKNLPPSFKHLFGTD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCC
WLGRDMFTRTIKGLRLSLAVGAFASIISVFMATIMGICAATFGKTLDAVISWFIDLFIGM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
PHLVFMILISFIVGGGIRGIVLAVSLTHWTSLARIVRSEVLQIRNAEYIQISKSYGKSSW
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCH
YIAKKHILPSVFPQIMIGFLLMFPHVILHEAGLTFMGFGLSPQTPAVGIILSEAMSHIST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHCC
GKWWLVIFPGLLLVIVIKSFDNIGEQLRILMEPVSSNE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFRRQKEINVRKKMIVLLGFSAMLLLCILIFSFLLSNDNFRLSSTDKNLPPSFKHLFGTD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCC
WLGRDMFTRTIKGLRLSLAVGAFASIISVFMATIMGICAATFGKTLDAVISWFIDLFIGM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
PHLVFMILISFIVGGGIRGIVLAVSLTHWTSLARIVRSEVLQIRNAEYIQISKSYGKSSW
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCH
YIAKKHILPSVFPQIMIGFLLMFPHVILHEAGLTFMGFGLSPQTPAVGIILSEAMSHIST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHCC
GKWWLVIFPGLLLVIVIKSFDNIGEQLRILMEPVSSNE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377; 3145906 [H]