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The map label for this gene is dppB [H]

Identifier: 28211535

GI number: 28211535

Start: 2022892

End: 2023878

Strand: Direct

Name: dppB [H]

Synonym: CTC01901

Alternate gene names: 28211535

Gene position: 2022892-2023878 (Clockwise)

Preceding gene: 28211534

Following gene: 28211536

Centisome position: 72.27

GC content: 36.78

Gene sequence:

>987_bases
GTGTTTATCATGGCAAAAAAATTCATTGTTCGCCTAATCCGAGCTGTGACTTTACTTATAGGATTATCAATTCTAACCTT
TTCCTTAATCCACTTATCTCCTATGGATCCCATAAATGCCTATGTTGGAGGAGATAGTTCAGTATCTATAGAACAAATTG
AAAGGATCAAAGAATATTGGGGTGTAGCTAAAAGTCCTATGGAACAATATTTTACCTGGATAGGAGCAATACTAAAAGGC
AACTTCGGAATTTCAAAACTTTATCGCAGACCAGTCATTGATATTATTAGGAGTCGTTTTATTACTTCCTTTGCATTAAT
GGGCACAGCTTGGATTTTGTCGGCAATCTTTGGTTATCTTCTAGGAGTTATTTCTGCAATGAACCGAGGGAAAATTATTG
ATAAAATCATTAAGTGGTATAGCTACACACTAGTTTCTACTCCTATCTTCTGGTTAGGACTCCTTTTATTGATTGTTTTC
GCGGTGGAATTAAAATGGTTCCCTGTTGGCTTGGCAGTGCCAGCAGGTGTGCTAGAAAGCAATATACGGTTTATTGATCG
GGTGCGACATTTTGTATTACCTGCCTTGACTCTGAGCATTTTAGGAGTTGCTAACATCGCAATGCATACCCGCGAAAAGA
TGATTGATATTCTAAACACTGAATATATCATCTTTGCTAAAGCAAGAGGTGAAAGTAAGTGGCAGATTTTTAAAAACCAT
GGTTTCCGAAATTCAGTTATTCCAGCAATTTCATTACAATTTGCCTATTTCGGAGAACTTTTCGGTGGTTCTGTATTAGC
TGAACAGGTATTTGCTTATCCTGGATTAGGTAGCATTTTAACCACCGCTGGATTAAAGGGTGATCTTCCTTTACTGATGG
GAATTATTCTGATTAGCTCCTTGTTTGTATTTGTAGGCAATTTTATTGCAGATATTTTAAATACAGTTGTAGATCCACGT
ATAAAGGGGGATACATTAGATGTTTAG

Upstream 100 bases:

>100_bases
AATGGACATGGAATAAATAATTAAATTAAATGTAAATTTGGAAAGGGACTTTTACGGGAATCATCTATTTTCGTGAAATC
CCTTCTATCCATGGAAAGGA

Downstream 100 bases:

>100_bases
AAGACAAAAAGAGATAAATGTACGAAAAAAAATGATAGTACTGCTTGGATTTTCTGCTATGCTTTTGCTATGTATTCTTA
TTTTTAGTTTTTTGTTGAGT

Product: dipeptide transport system permease protein dppB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MFIMAKKFIVRLIRAVTLLIGLSILTFSLIHLSPMDPINAYVGGDSSVSIEQIERIKEYWGVAKSPMEQYFTWIGAILKG
NFGISKLYRRPVIDIIRSRFITSFALMGTAWILSAIFGYLLGVISAMNRGKIIDKIIKWYSYTLVSTPIFWLGLLLLIVF
AVELKWFPVGLAVPAGVLESNIRFIDRVRHFVLPALTLSILGVANIAMHTREKMIDILNTEYIIFAKARGESKWQIFKNH
GFRNSVIPAISLQFAYFGELFGGSVLAEQVFAYPGLGSILTTAGLKGDLPLLMGIILISSLFVFVGNFIADILNTVVDPR
IKGDTLDV

Sequences:

>Translated_328_residues
MFIMAKKFIVRLIRAVTLLIGLSILTFSLIHLSPMDPINAYVGGDSSVSIEQIERIKEYWGVAKSPMEQYFTWIGAILKG
NFGISKLYRRPVIDIIRSRFITSFALMGTAWILSAIFGYLLGVISAMNRGKIIDKIIKWYSYTLVSTPIFWLGLLLLIVF
AVELKWFPVGLAVPAGVLESNIRFIDRVRHFVLPALTLSILGVANIAMHTREKMIDILNTEYIIFAKARGESKWQIFKNH
GFRNSVIPAISLQFAYFGELFGGSVLAEQVFAYPGLGSILTTAGLKGDLPLLMGIILISSLFVFVGNFIADILNTVVDPR
IKGDTLDV
>Mature_328_residues
MFIMAKKFIVRLIRAVTLLIGLSILTFSLIHLSPMDPINAYVGGDSSVSIEQIERIKEYWGVAKSPMEQYFTWIGAILKG
NFGISKLYRRPVIDIIRSRFITSFALMGTAWILSAIFGYLLGVISAMNRGKIIDKIIKWYSYTLVSTPIFWLGLLLLIVF
AVELKWFPVGLAVPAGVLESNIRFIDRVRHFVLPALTLSILGVANIAMHTREKMIDILNTEYIIFAKARGESKWQIFKNH
GFRNSVIPAISLQFAYFGELFGGSVLAEQVFAYPGLGSILTTAGLKGDLPLLMGIILISSLFVFVGNFIADILNTVVDPR
IKGDTLDV

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=319, Percent_Identity=32.9153605015674, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=29.3768545994065, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1789888, Length=320, Percent_Identity=28.125, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787761, Length=322, Percent_Identity=31.3664596273292, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI1787497, Length=318, Percent_Identity=28.3018867924528, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=27.6119402985075, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1788504, Length=287, Percent_Identity=27.8745644599303, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36573; Mature: 36573

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIMAKKFIVRLIRAVTLLIGLSILTFSLIHLSPMDPINAYVGGDSSVSIEQIERIKEYW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHH
GVAKSPMEQYFTWIGAILKGNFGISKLYRRPVIDIIRSRFITSFALMGTAWILSAIFGYL
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVISAMNRGKIIDKIIKWYSYTLVSTPIFWLGLLLLIVFAVELKWFPVGLAVPAGVLES
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHH
NIRFIDRVRHFVLPALTLSILGVANIAMHTREKMIDILNTEYIIFAKARGESKWQIFKNH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCC
GFRNSVIPAISLQFAYFGELFGGSVLAEQVFAYPGLGSILTTAGLKGDLPLLMGIILISS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHH
LFVFVGNFIADILNTVVDPRIKGDTLDV
HHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MFIMAKKFIVRLIRAVTLLIGLSILTFSLIHLSPMDPINAYVGGDSSVSIEQIERIKEYW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHH
GVAKSPMEQYFTWIGAILKGNFGISKLYRRPVIDIIRSRFITSFALMGTAWILSAIFGYL
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVISAMNRGKIIDKIIKWYSYTLVSTPIFWLGLLLLIVFAVELKWFPVGLAVPAGVLES
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHH
NIRFIDRVRHFVLPALTLSILGVANIAMHTREKMIDILNTEYIIFAKARGESKWQIFKNH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCC
GFRNSVIPAISLQFAYFGELFGGSVLAEQVFAYPGLGSILTTAGLKGDLPLLMGIILISS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHH
LFVFVGNFIADILNTVVDPRIKGDTLDV
HHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]