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The map label for this gene is atoC [C]

Identifier: 28211486

GI number: 28211486

Start: 1963126

End: 1963905

Strand: Direct

Name: atoC [C]

Synonym: CTC01849

Alternate gene names: 28211486

Gene position: 1963126-1963905 (Clockwise)

Preceding gene: 28211485

Following gene: 28211488

Centisome position: 70.13

GC content: 27.18

Gene sequence:

>780_bases
ATGTTTAGAATAGTAATTGCCGACGATGAAGATACCATTCGCAATGGTTTAAAAAACTTAATAGAATCCTACGAACTAAA
TTTATCAGTAATTGCCACAGCTAAAGATGGTGAAGAAGCAATGAAAGTTATTGAAAAATACCATCCTGAAATTATTTTAA
TGGATATAAATATGCCTTTTATGAATGGATTAGACGTCATTAAAGGTATTCATGAAAGAAACAAAGATGCTAAAATTATT
ATAATTTCTGGCTATAGTCAGTTTGAGTATGCTCAAAAAGCTTTGGAGTTAGGGGTTTTTAACTATCTACTAAAACCCAT
TAACTACCGTGATTTTAAAGACATACTTATTAAAGCAATGGATTCTTATTCAAAAAGAATGTGGGAAATTTCTAAAATAA
AAGAAGGAAAAGAAAAAATAGAAAGCTGTAAGGATGTAGGTAATCTTGCAATTTCCTATATTAAAAAAAATTTTTCAAAT
AACGAAATTTCTCTTAACTTAGTAGCTCAACAATTTTATATAAGTCAATCTTATCTTACTAGAGTTATTAAACAAAAAAC
AGGAGTTAGCTTTACAGATTACCTTAATAAATTAAGAATAAACATGGCAAAAAAACTTCTTACTGACAATAATAATGACT
ATACTATCAATGATATTTCCAATATGGTGGGATATAGTAGCCAACATTATTTTAGCAGAGCCTTTAAAAATTATATGGAG
ATTTCACCCAAAAATTATCGTAATAAAGTAAAATCATTAATAAAAAACACCACTAAGTAA

Upstream 100 bases:

>100_bases
AACTTGCCTTTGGAAAAAAATATAGTATTGAAATAAAAAGTGAATTAAAAATAGGAACTCAGGTATTGTTAAGAATACCT
TTAATAAGTGAGGGATTTGA

Downstream 100 bases:

>100_bases
TAACTTAATGGTGTTTTTTATTACACTTCAAATAGTTTAAGTATCTCTTCCTCTGTTAAAGATGCAAAATTTTCACCGCT
GGATAATTCATCTCCCATTA

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MFRIVIADDEDTIRNGLKNLIESYELNLSVIATAKDGEEAMKVIEKYHPEIILMDINMPFMNGLDVIKGIHERNKDAKII
IISGYSQFEYAQKALELGVFNYLLKPINYRDFKDILIKAMDSYSKRMWEISKIKEGKEKIESCKDVGNLAISYIKKNFSN
NEISLNLVAQQFYISQSYLTRVIKQKTGVSFTDYLNKLRINMAKKLLTDNNNDYTINDISNMVGYSSQHYFSRAFKNYME
ISPKNYRNKVKSLIKNTTK

Sequences:

>Translated_259_residues
MFRIVIADDEDTIRNGLKNLIESYELNLSVIATAKDGEEAMKVIEKYHPEIILMDINMPFMNGLDVIKGIHERNKDAKII
IISGYSQFEYAQKALELGVFNYLLKPINYRDFKDILIKAMDSYSKRMWEISKIKEGKEKIESCKDVGNLAISYIKKNFSN
NEISLNLVAQQFYISQSYLTRVIKQKTGVSFTDYLNKLRINMAKKLLTDNNNDYTINDISNMVGYSSQHYFSRAFKNYME
ISPKNYRNKVKSLIKNTTK
>Mature_259_residues
MFRIVIADDEDTIRNGLKNLIESYELNLSVIATAKDGEEAMKVIEKYHPEIILMDINMPFMNGLDVIKGIHERNKDAKII
IISGYSQFEYAQKALELGVFNYLLKPINYRDFKDILIKAMDSYSKRMWEISKIKEGKEKIESCKDVGNLAISYIKKNFSN
NEISLNLVAQQFYISQSYLTRVIKQKTGVSFTDYLNKLRINMAKKLLTDNNNDYTINDISNMVGYSSQHYFSRAFKNYME
ISPKNYRNKVKSLIKNTTK

Specific function: Probable member of the two-component regulatory system SAB0162c/SAB0161c [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=163, Percent_Identity=27.6073619631902, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790339, Length=119, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790299, Length=123, Percent_Identity=27.6422764227642, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787487, Length=106, Percent_Identity=33.0188679245283, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082052, Length=148, Percent_Identity=25, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788222, Length=105, Percent_Identity=27.6190476190476, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790391, Length=109, Percent_Identity=32.1100917431193, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790437, Length=117, Percent_Identity=28.2051282051282, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00165 HTH_AraC; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 30117; Mature: 30117

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRIVIADDEDTIRNGLKNLIESYELNLSVIATAKDGEEAMKVIEKYHPEIILMDINMPF
CEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCH
MNGLDVIKGIHERNKDAKIIIISGYSQFEYAQKALELGVFNYLLKPINYRDFKDILIKAM
HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DSYSKRMWEISKIKEGKEKIESCKDVGNLAISYIKKNFSNNEISLNLVAQQFYISQSYLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH
RVIKQKTGVSFTDYLNKLRINMAKKLLTDNNNDYTINDISNMVGYSSQHYFSRAFKNYME
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHH
ISPKNYRNKVKSLIKNTTK
CCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFRIVIADDEDTIRNGLKNLIESYELNLSVIATAKDGEEAMKVIEKYHPEIILMDINMPF
CEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCH
MNGLDVIKGIHERNKDAKIIIISGYSQFEYAQKALELGVFNYLLKPINYRDFKDILIKAM
HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DSYSKRMWEISKIKEGKEKIESCKDVGNLAISYIKKNFSNNEISLNLVAQQFYISQSYLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH
RVIKQKTGVSFTDYLNKLRINMAKKLLTDNNNDYTINDISNMVGYSSQHYFSRAFKNYME
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHH
ISPKNYRNKVKSLIKNTTK
CCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA