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The map label for this gene is rbfA

Identifier: 28210962

GI number: 28210962

Start: 1369370

End: 1369735

Strand: Direct

Name: rbfA

Synonym: CTC01276

Alternate gene names: 28210962

Gene position: 1369370-1369735 (Clockwise)

Preceding gene: 28210961

Following gene: 28210963

Centisome position: 48.92

GC content: 30.05

Gene sequence:

>366_bases
ATGGCTAAGTATAGGGCTGGTAGAATAAATGAAGAAGTAAAAAAAGAAATTTCAAGCATAATCCGAATGGATTTAAAAGA
TCCAAGAATAAGTGCTATGGTTAGCGTAACTAAAGTAGATGTAACTAAAGATCAAAGATATGCAAAGGTATATGTAAGTA
TATTTGGAGATGAAAAGTCAAAAGAGGAAACATTAGAAGCACTTAAAAGCTCTAGTGGCTTTATAAGAAGAGAAGTAGGA
CATAGAATTAAATTAAGATATACACCAGAGATTATTATACAAAATGATGATTCTATAGAGCATGGTATGCACATAGATTC
TATTTTGGATAAAATCAAGGAGAATGAAGACCATGATAACAAATAA

Upstream 100 bases:

>100_bases
AATGGTTGAGAAATTTAATGATATAAAAGAGGGCGACACAATAGAAGCTTATACAATGGAGACTATTAAAAAGCATACAC
TATGATTGGAGTGATAAAAT

Downstream 100 bases:

>100_bases
AATATTAGATTTAATAATGGAAAGTAACAAAATAGCATTAACTTTCCATGTGTCTCCAGATGGTGATTCTATAGGAAGTA
CTTTAGCTTTATATCAAGGT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MAKYRAGRINEEVKKEISSIIRMDLKDPRISAMVSVTKVDVTKDQRYAKVYVSIFGDEKSKEETLEALKSSSGFIRREVG
HRIKLRYTPEIIIQNDDSIEHGMHIDSILDKIKENEDHDNK

Sequences:

>Translated_121_residues
MAKYRAGRINEEVKKEISSIIRMDLKDPRISAMVSVTKVDVTKDQRYAKVYVSIFGDEKSKEETLEALKSSSGFIRREVG
HRIKLRYTPEIIIQNDDSIEHGMHIDSILDKIKENEDHDNK
>Mature_120_residues
AKYRAGRINEEVKKEISSIIRMDLKDPRISAMVSVTKVDVTKDQRYAKVYVSIFGDEKSKEETLEALKSSSGFIRREVGH
RIKLRYTPEIIIQNDDSIEHGMHIDSILDKIKENEDHDNK

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=110, Percent_Identity=35.4545454545455, Blast_Score=84, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CLOTE (Q895J7)

Other databases:

- EMBL:   AE015927
- RefSeq:   NP_781906.1
- ProteinModelPortal:   Q895J7
- SMR:   Q895J7
- GeneID:   1059129
- GenomeReviews:   AE015927_GR
- KEGG:   ctc:CTC01276
- NMPDR:   fig|212717.1.peg.1128
- HOGENOM:   HBG751055
- OMA:   QMRRAPE
- PhylomeDB:   Q895J7
- ProtClustDB:   PRK00521
- BioCyc:   CTET212717:CTC_01276-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14020; Mature: 13889

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYRAGRINEEVKKEISSIIRMDLKDPRISAMVSVTKVDVTKDQRYAKVYVSIFGDEKS
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHEEEEEEECCCCCHHEEEEEEEECCCCC
KEETLEALKSSSGFIRREVGHRIKLRYTPEIIIQNDDSIEHGMHIDSILDKIKENEDHDN
HHHHHHHHHCCCCHHHHHCCCEEEEEECCEEEEECCCCCHHCCCHHHHHHHHHCCCCCCC
K
C
>Mature Secondary Structure 
AKYRAGRINEEVKKEISSIIRMDLKDPRISAMVSVTKVDVTKDQRYAKVYVSIFGDEKS
CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHEEEEEEECCCCCHHEEEEEEEECCCCC
KEETLEALKSSSGFIRREVGHRIKLRYTPEIIIQNDDSIEHGMHIDSILDKIKENEDHDN
HHHHHHHHHCCCCHHHHHCCCEEEEEECCEEEEECCCCCHHCCCHHHHHHHHHCCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129