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The map label for this gene is rimP

Identifier: 28210958

GI number: 28210958

Start: 1365136

End: 1365597

Strand: Direct

Name: rimP

Synonym: CTC01272

Alternate gene names: 28210958

Gene position: 1365136-1365597 (Clockwise)

Preceding gene: 28210957

Following gene: 28210959

Centisome position: 48.77

GC content: 26.19

Gene sequence:

>462_bases
ATGAATAATAAAACTTTTATAGATAATTTAAAAGAATTGACAGAACCTATAGTTAATGATTTAGACTATGAATTATATTA
TTTAGAGTTTGTAAATGAAAATAAGGAGAATTATTTAAGAATATATATAGATAGTGAAAGTGGAATAGGATTAGAAGATT
GTGAAAAAGTAAGTAGAGCTGTAAGTGCTATGTTAGATGAAAAAGATCCTATAGACACTAGCTATTATTTAGAAGTATCC
TCACCAGGACTTGAAAGACAACTATATGATGATAAACATATAGAAGACAACATAGGTAAAACTGCTTGTGTAAGGCTGGA
GTCTTTATTTAATGGTGGTAGAAAATTTGAAGGAAAGCTTAAAAGTTTTGATAATGAAAACCTTACTTTAGAAATCAATG
CTGAAGATTTTAAAATTCCACGTAAAAAGATTAAAAGAATAAATTTAATTTATGAAGGGTAA

Upstream 100 bases:

>100_bases
TGTTAAAAACGCAACTTTTAGTTGCGTTTTTAAATTAATTTGATTTTTTTGAATTGTAAGCATCTTTATATTACAAACTA
TAGTTTAAGGAGGGATTTAA

Downstream 100 bases:

>100_bases
AGGGAGGAAAATTAAATGAATGAGGAATTCATAGTAGCATTAAAAGAAATTGTTAAAGAAAAGGGTATTAGTGCGGAACT
ACTTTTTAATACTATAGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MNNKTFIDNLKELTEPIVNDLDYELYYLEFVNENKENYLRIYIDSESGIGLEDCEKVSRAVSAMLDEKDPIDTSYYLEVS
SPGLERQLYDDKHIEDNIGKTACVRLESLFNGGRKFEGKLKSFDNENLTLEINAEDFKIPRKKIKRINLIYEG

Sequences:

>Translated_153_residues
MNNKTFIDNLKELTEPIVNDLDYELYYLEFVNENKENYLRIYIDSESGIGLEDCEKVSRAVSAMLDEKDPIDTSYYLEVS
SPGLERQLYDDKHIEDNIGKTACVRLESLFNGGRKFEGKLKSFDNENLTLEINAEDFKIPRKKIKRINLIYEG
>Mature_153_residues
MNNKTFIDNLKELTEPIVNDLDYELYYLEFVNENKENYLRIYIDSESGIGLEDCEKVSRAVSAMLDEKDPIDTSYYLEVS
SPGLERQLYDDKHIEDNIGKTACVRLESLFNGGRKFEGKLKSFDNENLTLEINAEDFKIPRKKIKRINLIYEG

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=147, Percent_Identity=38.0952380952381, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_CLOTE (Q895K1)

Other databases:

- EMBL:   AE015927
- RefSeq:   NP_781902.1
- ProteinModelPortal:   Q895K1
- SMR:   Q895K1
- GeneID:   1059538
- GenomeReviews:   AE015927_GR
- KEGG:   ctc:CTC01272
- NMPDR:   fig|212717.1.peg.1124
- HOGENOM:   HBG668072
- OMA:   PYEKIAN
- PhylomeDB:   Q895K1
- ProtClustDB:   PRK00092
- BioCyc:   CTET212717:CTC_01272-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 17832; Mature: 17832

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKTFIDNLKELTEPIVNDLDYELYYLEFVNENKENYLRIYIDSESGIGLEDCEKVSRA
CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHH
VSAMLDEKDPIDTSYYLEVSSPGLERQLYDDKHIEDNIGKTACVRLESLFNGGRKFEGKL
HHHHHCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEECCHH
KSFDNENLTLEINAEDFKIPRKKIKRINLIYEG
CCCCCCCEEEEECCCCCCCCHHHHHEEEEEECC
>Mature Secondary Structure
MNNKTFIDNLKELTEPIVNDLDYELYYLEFVNENKENYLRIYIDSESGIGLEDCEKVSRA
CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHH
VSAMLDEKDPIDTSYYLEVSSPGLERQLYDDKHIEDNIGKTACVRLESLFNGGRKFEGKL
HHHHHCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEECCHH
KSFDNENLTLEINAEDFKIPRKKIKRINLIYEG
CCCCCCCEEEEECCCCCCCCHHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129