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The map label for this gene is rimM [H]

Identifier: 28210936

GI number: 28210936

Start: 1340598

End: 1341110

Strand: Direct

Name: rimM [H]

Synonym: CTC01250

Alternate gene names: 28210936

Gene position: 1340598-1341110 (Clockwise)

Preceding gene: 28210935

Following gene: 28210937

Centisome position: 47.89

GC content: 27.1

Gene sequence:

>513_bases
TTGAAAAGAGGTAAATTTATGGAACAATTTCTTAAAATAGGTCTTATTATAAATACCCACGGATTAAAAGGAGAACTAAA
AGTAAACCCACAAACTGATAATATAGATAGATTCAAAAAGTTAAAAAGGGTTTACATAGCTGGAGAAGAAAAACAAGTAG
AAGGATGTAAATTTTTAAATGATAAGGTAGTTTTAAAAATACAAGGTATAGATGGTATTGAAATTGCTAATAAATACAGA
AATAAATATATAGAAGTTAAAAGAGAAGATGCAGTAGAGCTTCCAGAAGGTAGATACTATGTTGCAGATATTATAGGCTG
TAAAGTATTAGACGAAGATGGAAACTACCTTGGTAAAGTAAAAGAGGTTATACATACTAAAAATAATGATGTATACTGGG
TAGAAGGAAAAAAAGAATTATTAATTCCTGTTCTAAAGACTATTGTGGTTAAAATAGATATAGAAAATGAAGAAATAATA
ATAAAACCTGTAAAAACATGGCTTTTAGAATAG

Upstream 100 bases:

>100_bases
AACTGTAGTTAAAGCAGCAGCAATTAAAGAAAATAAAAGAGTTGTTGTAGAAATAATATAATTATTTAGAAGAGAGTTAG
GGTGTAAACCTAGCTCTTTT

Downstream 100 bases:

>100_bases
ACATATTAACCCTTTTTCCTGATATGTTTAATATATTTAACCACAGTATTATGGGGAAAGCTTTAGAAAAGGATATAATT
AATATAAATACCATAAATAT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKRGKFMEQFLKIGLIINTHGLKGELKVNPQTDNIDRFKKLKRVYIAGEEKQVEGCKFLNDKVVLKIQGIDGIEIANKYR
NKYIEVKREDAVELPEGRYYVADIIGCKVLDEDGNYLGKVKEVIHTKNNDVYWVEGKKELLIPVLKTIVVKIDIENEEII
IKPVKTWLLE

Sequences:

>Translated_170_residues
MKRGKFMEQFLKIGLIINTHGLKGELKVNPQTDNIDRFKKLKRVYIAGEEKQVEGCKFLNDKVVLKIQGIDGIEIANKYR
NKYIEVKREDAVELPEGRYYVADIIGCKVLDEDGNYLGKVKEVIHTKNNDVYWVEGKKELLIPVLKTIVVKIDIENEEII
IKPVKTWLLE
>Mature_170_residues
MKRGKFMEQFLKIGLIINTHGLKGELKVNPQTDNIDRFKKLKRVYIAGEEKQVEGCKFLNDKVVLKIQGIDGIEIANKYR
NKYIEVKREDAVELPEGRYYVADIIGCKVLDEDGNYLGKVKEVIHTKNNDVYWVEGKKELLIPVLKTIVVKIDIENEEII
IKPVKTWLLE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=159, Percent_Identity=31.4465408805031, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19700; Mature: 19700

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRGKFMEQFLKIGLIINTHGLKGELKVNPQTDNIDRFKKLKRVYIAGEEKQVEGCKFLN
CCCCHHHHHHHHHEEEEECCCCCCEEEECCCCCCHHHHHHHHHEEECCCCCCCCCCEECC
DKVVLKIQGIDGIEIANKYRNKYIEVKREDAVELPEGRYYVADIIGCKVLDEDGNYLGKV
CEEEEEEECCCCHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHH
KEVIHTKNNDVYWVEGKKELLIPVLKTIVVKIDIENEEIIIKPVKTWLLE
HHHHHCCCCCEEEECCCHHHHHHHHHEEEEEEEECCCEEEEEEHHHHHCC
>Mature Secondary Structure
MKRGKFMEQFLKIGLIINTHGLKGELKVNPQTDNIDRFKKLKRVYIAGEEKQVEGCKFLN
CCCCHHHHHHHHHEEEEECCCCCCEEEECCCCCCHHHHHHHHHEEECCCCCCCCCCEECC
DKVVLKIQGIDGIEIANKYRNKYIEVKREDAVELPEGRYYVADIIGCKVLDEDGNYLGKV
CEEEEEEECCCCHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHH
KEVIHTKNNDVYWVEGKKELLIPVLKTIVVKIDIENEEIIIKPVKTWLLE
HHHHHCCCCCEEEECCCHHHHHHHHHEEEEEEEECCCEEEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129 [H]