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The map label for this gene is 28210934

Identifier: 28210934

GI number: 28210934

Start: 1338306

End: 1338659

Strand: Direct

Name: 28210934

Synonym: CTC01247

Alternate gene names: NA

Gene position: 1338306-1338659 (Clockwise)

Preceding gene: 28210933

Following gene: 28210935

Centisome position: 47.81

GC content: 25.14

Gene sequence:

>354_bases
ATGGAAGAAAAAATAGAAATGTCAATGTTACTAGACTTTTATGGAATTTTACTTACAGATAAACAAAAAAGCATTATGAA
CTTATACTGTAATGAAGATTTTTCTTTAGCAGAAATATCTGAACACACTAAAACCAGTAGGCAGGCAGTTCATGATATAA
TAAAAAGATGTGGTAAACTTCTTAAAAGCTATGAAGAAAAATTAAAACTTATGGGTAAACATATAGAGAAGATAAAAGCT
AAAAAAAATATGTTAAATAAACTAGACTATTTAAAAGAAAACTGTAAGGAAGAAGAACTACAGAAGTTAATAGAAGAATT
AAAAAATGAATTAAATAATAGTTTAGGAGGTTAG

Upstream 100 bases:

>100_bases
TTCATTATTAATTAAAAAAGGAGTCTGTTAAGTAAAAATACTTGACAGCTCTTTTTTTTTTTGATAATATATATTTTGTT
CACTTAAAGGAGTAGGTTTC

Downstream 100 bases:

>100_bases
ATATGGCATTTGATGGGTTAGCCTCTAAATTGCAGGAAACCTTTAAGAAACTTAGAGGTAAGGGAAAGCTTTCCGAAAAA
GATATAAAAGAGGCTATGAG

Product: putative DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MEEKIEMSMLLDFYGILLTDKQKSIMNLYCNEDFSLAEISEHTKTSRQAVHDIIKRCGKLLKSYEEKLKLMGKHIEKIKA
KKNMLNKLDYLKENCKEEELQKLIEELKNELNNSLGG

Sequences:

>Translated_117_residues
MEEKIEMSMLLDFYGILLTDKQKSIMNLYCNEDFSLAEISEHTKTSRQAVHDIIKRCGKLLKSYEEKLKLMGKHIEKIKA
KKNMLNKLDYLKENCKEEELQKLIEELKNELNNSLGG
>Mature_117_residues
MEEKIEMSMLLDFYGILLTDKQKSIMNLYCNEDFSLAEISEHTKTSRQAVHDIIKRCGKLLKSYEEKLKLMGKHIEKIKA
KKNMLNKLDYLKENCKEEELQKLIEELKNELNNSLGG

Specific function: Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein

COG id: COG2739

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0122 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1247_CLOTE (Q895M5)

Other databases:

- EMBL:   AE015927
- RefSeq:   NP_781878.1
- PDB:   2AKD
- PDBsum:   2AKD
- ProteinModelPortal:   Q895M5
- SMR:   Q895M5
- GeneID:   1059138
- GenomeReviews:   AE015927_GR
- KEGG:   ctc:CTC01247
- NMPDR:   fig|212717.1.peg.1100
- HOGENOM:   HBG427419
- OMA:   LDFYGQL
- ProtClustDB:   PRK00118
- BioCyc:   CTET212717:CTC_01247-MONOMER
- HAMAP:   MF_00245
- InterPro:   IPR013324
- InterPro:   IPR007394
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF04297 UPF0122; SSF88659 Sigma_r3_r4

EC number: NA

Molecular weight: Translated: 13725; Mature: 13725

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKIEMSMLLDFYGILLTDKQKSIMNLYCNEDFSLAEISEHTKTSRQAVHDIIKRCGKL
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKSYEEKLKLMGKHIEKIKAKKNMLNKLDYLKENCKEEELQKLIEELKNELNNSLGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEEKIEMSMLLDFYGILLTDKQKSIMNLYCNEDFSLAEISEHTKTSRQAVHDIIKRCGKL
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKSYEEKLKLMGKHIEKIKAKKNMLNKLDYLKENCKEEELQKLIEELKNELNNSLGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129