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The map label for this gene is deoR [H]

Identifier: 28210863

GI number: 28210863

Start: 1250241

End: 1250888

Strand: Direct

Name: deoR [H]

Synonym: CTC01171

Alternate gene names: 28210863

Gene position: 1250241-1250888 (Clockwise)

Preceding gene: 28210862

Following gene: 28210864

Centisome position: 44.66

GC content: 25.46

Gene sequence:

>648_bases
TTGGAATATCTAGAAAAGGAAGGACTTCTTAAGAGGGTATATGGTGGAGCAGTTCTAAAAAAGATAGACAACAATCAACT
AAAATTTGAAAACAGAGAAAAGGAATTTAGTAGTGAAAAAAAAGAAATAGCTAATATTGCAACTAGATATGTTATTGAAG
GACAATCGCTGGCTATGGATGCAAGTACTACAAATTTAGAAATAGCAAAGGTATTAAAAACTAAATTTAAAAAATTAACT
ATATTAACTAATTCGCTAGCTATAGCTAATGAACTAATTGATATGGATAAGTACACAATAATTCTCACTGGTGGCATTTT
GAAAAATGATGAATTTTCTTTAGTTGGAGATATGGCTCAAAAATATATTGAAAGTTTTAACATACATACTGCTTTTATAA
GTGTAAGTGGTGTTTCATTAAAAGAAGGACTTACGGATTATATATTAGATCATCTACAAATTCAGAAAAAGTTTATTGAA
ATATCACAAAATGTAATTGTATTAGCTGATAGTAGTAAATTTGATTCTGTTTCTTTATTAAATGTTTGTAATTTAGAAGA
TATAAATATGATAATTACTGATTCTAAAATTAAGAAAAATGTTTTAGAAAAATATTTGAATAATGGAATAGAAGTGATAA
ATATATAG

Upstream 100 bases:

>100_bases
ATATGAACAAACCCTTAGCATATTAAACAGAGAAGGATCTGTTAAGGTTTCAAAACTTACAAAACTTTTTAATGTATCTA
TAGAAACAATAAGGAGAGAC

Downstream 100 bases:

>100_bases
ATATGAAAGGAGAAATTTCATGAAATTTCTAGAGGAATTTTTTAGAAACTTCTCAAATTTAATTTGGGGAAATTGGCTTA
TAATTACCTTAATTAGTATT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MEYLEKEGLLKRVYGGAVLKKIDNNQLKFENREKEFSSEKKEIANIATRYVIEGQSLAMDASTTNLEIAKVLKTKFKKLT
ILTNSLAIANELIDMDKYTIILTGGILKNDEFSLVGDMAQKYIESFNIHTAFISVSGVSLKEGLTDYILDHLQIQKKFIE
ISQNVIVLADSSKFDSVSLLNVCNLEDINMIITDSKIKKNVLEKYLNNGIEVINI

Sequences:

>Translated_215_residues
MEYLEKEGLLKRVYGGAVLKKIDNNQLKFENREKEFSSEKKEIANIATRYVIEGQSLAMDASTTNLEIAKVLKTKFKKLT
ILTNSLAIANELIDMDKYTIILTGGILKNDEFSLVGDMAQKYIESFNIHTAFISVSGVSLKEGLTDYILDHLQIQKKFIE
ISQNVIVLADSSKFDSVSLLNVCNLEDINMIITDSKIKKNVLEKYLNNGIEVINI
>Mature_215_residues
MEYLEKEGLLKRVYGGAVLKKIDNNQLKFENREKEFSSEKKEIANIATRYVIEGQSLAMDASTTNLEIAKVLKTKFKKLT
ILTNSLAIANELIDMDKYTIILTGGILKNDEFSLVGDMAQKYIESFNIHTAFISVSGVSLKEGLTDYILDHLQIQKKFIE
ISQNVIVLADSSKFDSVSLLNVCNLEDINMIITDSKIKKNVLEKYLNNGIEVINI

Specific function: Probable Repressor For The Aga Operon For N-Acetyl Galactosamine Transport And Metabolism. [C]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=215, Percent_Identity=28.3720930232558, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1789059, Length=212, Percent_Identity=32.5471698113208, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790753, Length=190, Percent_Identity=30, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1788069, Length=214, Percent_Identity=30.8411214953271, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1789829, Length=209, Percent_Identity=25.3588516746411, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1787540, Length=199, Percent_Identity=31.1557788944724, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI226510968, Length=200, Percent_Identity=28, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082344, Length=210, Percent_Identity=24.2857142857143, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 24247; Mature: 24247

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYLEKEGLLKRVYGGAVLKKIDNNQLKFENREKEFSSEKKEIANIATRYVIEGQSLAMD
CCCHHHHHHHHHHHCCHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHEECCCCEEEC
ASTTNLEIAKVLKTKFKKLTILTNSLAIANELIDMDKYTIILTGGILKNDEFSLVGDMAQ
CCCCCHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCCEEEEEECCEECCCCHHHHHHHHH
KYIESFNIHTAFISVSGVSLKEGLTDYILDHLQIQKKFIEISQNVIVLADSSKFDSVSLL
HHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEE
NVCNLEDINMIITDSKIKKNVLEKYLNNGIEVINI
EECCCCCCEEEEECHHHHHHHHHHHHHCCEEEEEC
>Mature Secondary Structure
MEYLEKEGLLKRVYGGAVLKKIDNNQLKFENREKEFSSEKKEIANIATRYVIEGQSLAMD
CCCHHHHHHHHHHHCCHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHEECCCCEEEC
ASTTNLEIAKVLKTKFKKLTILTNSLAIANELIDMDKYTIILTGGILKNDEFSLVGDMAQ
CCCCCHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCCEEEEEECCEECCCCHHHHHHHHH
KYIESFNIHTAFISVSGVSLKEGLTDYILDHLQIQKKFIEISQNVIVLADSSKFDSVSLL
HHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEE
NVCNLEDINMIITDSKIKKNVLEKYLNNGIEVINI
EECCCCCCEEEEECHHHHHHHHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]