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The map label for this gene is rnfE [H]

Identifier: 28210727

GI number: 28210727

Start: 1090761

End: 1091363

Strand: Direct

Name: rnfE [H]

Synonym: CTC01022

Alternate gene names: 28210727

Gene position: 1090761-1091363 (Clockwise)

Preceding gene: 28210726

Following gene: 28210728

Centisome position: 38.97

GC content: 31.51

Gene sequence:

>603_bases
ATGTCAATGGGTGATAGATTATACAATGGTATTATTAGAGAAAATCCAACTTTTGTTCAGGTATTAGGAATGTGTCCAAC
CCTAGCGGTAACTTCAAGTGCTATGAATGGGGCAGGAATGGGATTATCAACAACTGTTGTATTAATAGGATCAAACGTAG
CTATATCATTACTTAGAAAAGTTATTCCAGATGAAATTCGTATACCGGCATATATAACTATAATAGCTACTTTTGTTACA
GTGTTGCAATTTTTACTTAAAGCATATCTTCCAGATTTAAATAAGTCTTTAGGTATATTTATACCACTTATAGTTGTTAA
CTGTATTATACTTGGAAGAGCGGAAGCTTATGCATCAAAAAATGGTATAGTAAGCTCGTTATTTGATGGTTTGGGAATGG
GATTAGGATTTACTTTATCCTTAACTGTACTAGGAATAATAAGAGAATTATTAGGAAATGGAACAGTATTTGGTTGGAGA
TTAATGCCACAAGCATATAATCCAGCACTAATAATGATACTTGCACCTGGAGCTTTCTTTACATTAGGAATATTATTGGC
AATATTAAATGCTAGAAAATTAAAGAAAGCTAAAAACAATTAA

Upstream 100 bases:

>100_bases
CAGCTATAACAGGTGCTACAATAACAAGTAATGCAGTAACAGATGGGGTTAATAAAGCAATAGAATTTTATAACTCCAAA
TTGAAAGGAGGAAATTAATA

Downstream 100 bases:

>100_bases
AAATAAGTTGAAGCTTATTTTATAAGAAAGGTGGATTTTAAAGGATATGAAGATATTTACCATATTTTTAAGTGCGCTAT
TAGTTAATAACTTCGTTTTA

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MSMGDRLYNGIIRENPTFVQVLGMCPTLAVTSSAMNGAGMGLSTTVVLIGSNVAISLLRKVIPDEIRIPAYITIIATFVT
VLQFLLKAYLPDLNKSLGIFIPLIVVNCIILGRAEAYASKNGIVSSLFDGLGMGLGFTLSLTVLGIIRELLGNGTVFGWR
LMPQAYNPALIMILAPGAFFTLGILLAILNARKLKKAKNN

Sequences:

>Translated_200_residues
MSMGDRLYNGIIRENPTFVQVLGMCPTLAVTSSAMNGAGMGLSTTVVLIGSNVAISLLRKVIPDEIRIPAYITIIATFVT
VLQFLLKAYLPDLNKSLGIFIPLIVVNCIILGRAEAYASKNGIVSSLFDGLGMGLGFTLSLTVLGIIRELLGNGTVFGWR
LMPQAYNPALIMILAPGAFFTLGILLAILNARKLKKAKNN
>Mature_199_residues
SMGDRLYNGIIRENPTFVQVLGMCPTLAVTSSAMNGAGMGLSTTVVLIGSNVAISLLRKVIPDEIRIPAYITIIATFVTV
LQFLLKAYLPDLNKSLGIFIPLIVVNCIILGRAEAYASKNGIVSSLFDGLGMGLGFTLSLTVLGIIRELLGNGTVFGWRL
MPQAYNPALIMILAPGAFFTLGILLAILNARKLKKAKNN

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=207, Percent_Identity=46.3768115942029, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1787914, Length=153, Percent_Identity=32.0261437908497, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 21386; Mature: 21255

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMGDRLYNGIIRENPTFVQVLGMCPTLAVTSSAMNGAGMGLSTTVVLIGSNVAISLLRK
CCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHCCCCCCCHHEEEEEECCHHHHHHHHH
VIPDEIRIPAYITIIATFVTVLQFLLKAYLPDLNKSLGIFIPLIVVNCIILGRAEAYASK
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHC
NGIVSSLFDGLGMGLGFTLSLTVLGIIRELLGNGTVFGWRLMPQAYNPALIMILAPGAFF
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCHHH
TLGILLAILNARKLKKAKNN
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SMGDRLYNGIIRENPTFVQVLGMCPTLAVTSSAMNGAGMGLSTTVVLIGSNVAISLLRK
CCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHCCCCCCCHHEEEEEECCHHHHHHHHH
VIPDEIRIPAYITIIATFVTVLQFLLKAYLPDLNKSLGIFIPLIVVNCIILGRAEAYASK
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHC
NGIVSSLFDGLGMGLGFTLSLTVLGIIRELLGNGTVFGWRLMPQAYNPALIMILAPGAFF
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCHHH
TLGILLAILNARKLKKAKNN
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA