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The map label for this gene is rnfC [H]

Identifier: 28210724

GI number: 28210724

Start: 1087885

End: 1089234

Strand: Direct

Name: rnfC [H]

Synonym: CTC01019

Alternate gene names: 28210724

Gene position: 1087885-1089234 (Clockwise)

Preceding gene: 28210720

Following gene: 28210725

Centisome position: 38.86

GC content: 32.74

Gene sequence:

>1350_bases
TTGCAGTTAATTAAGTGTAAATTAAGAGATAGGAGGGTCTTTATGGAAATATTAACGTTTAAAAATGGAGTACATCCTCC
TCATGGTAAACATTACAGTGAAAACAAAGCAATTGAAGAATATTTACCAGAGGGAGATATAGTTATTCCTATGTCACAGC
ATATTGGTGCACCAGCAGAACCTATAGTTAAAAAAGGAGATAGGGTTTTAGTTGGACAAAAAATAGGTGAAGCAAAGGGA
TTTATTTCTGCAAACGTTCACGCCAGTGTTTCAGGTACTGTTAAGAATGTATCAGAAATAACTCAATTTAATGGTGCTAA
GTGCAAAGCTGTTATCATAGAAAATGATGGACAGTATGAAGAAGTGGAAACCCAAAAAAGGGATTACACAAAATTATCTA
ATGAAGAAATAATAAATATAGTAAAAGAAGCAGGTATAGTAGGTATGGGAGGAGCAACTTTCCCTACAAATGTAAAGTTA
ACTCCACCACCAGATAAAAAAATAGAATATATAGTAGTAAATGCTGCTGAATGCGAACCTTACTTAACTTGTGACCACAG
AATGATGTTAGAACATAGTAAGGAAATAATTAAAGGATTAAAGGTAATACTTAAATTATTCCCAAATGCTAAAGGTCTTA
TAGGAATTGAAGACAATAAGCCAAATGCTATAAAAGCTATGAAAGAAGCAGCTAGTGGTGAAGAAAGAATAGAAGTTAAA
TCTGTTAAAACTAAATATCCTCAAGGAGCAGAAAAACAATTAATATATGCTTTAATTGGGAAAGAAGTTCCATCAGGCGG
ATTACCAGCTGATGCAGGATGTATTGTTCAAAACGTAGATACAGTATATGAGATATACAATGCAGTAGTAAATGGAAAAG
CTCTTGTTTCAAGAGTAGTTACAGTAACAGGAGATGCTATAAAAGAACCTAAAAATATTAGATTTAGAATAGGAACTTCT
GTAAAAGAATTAGTAGAAGCTGCAGGCGGTTTCTTAGAAGAACCTTATAAAGTAATCTCAGGTGGACCTATGATGGGAAT
AGCTATGTATTCATTAGATGTACCAGCAGCAAAGGGAACATCTGGAATATTATGCTTAACTAAAAAGGTTGCAGAAATCG
AAGATGAATCAAATTGTATAAATTGTGGTAAATGTGTACAAGTTTGCCCAATGAATTTAATTCCAACAAAACTTGCAGTA
GCATCATCTATAAGAAATTATGATATGTTTAATGAGTTTAATGGAAGAGATTGTATTGAATGTGGATGTTGTTCTTTCAT
ATGTCCAGCAAGAAGACATTTATTGCAAAGAATACGTTCAGGTAAAAAAGCAGCATCTAGAAAGAAATAA

Upstream 100 bases:

>100_bases
AAAGATAAGGCATAGATTTCAAATTAGCCAAAAACTCTTGACATGGTTCACATAACAATTTAATATTGAGGATGGACATT
GTTTATGATTTAACTATATT

Downstream 100 bases:

>100_bases
TTTTAGAGAGGTGAATTTTAATGTCTGAAACAACAATGTATACAGTGTCATCATCTCCACATATACGTGAAAAAGACACT
ACACAATCTATAATGAGAGA

Product: rnfC/nqrF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MQLIKCKLRDRRVFMEILTFKNGVHPPHGKHYSENKAIEEYLPEGDIVIPMSQHIGAPAEPIVKKGDRVLVGQKIGEAKG
FISANVHASVSGTVKNVSEITQFNGAKCKAVIIENDGQYEEVETQKRDYTKLSNEEIINIVKEAGIVGMGGATFPTNVKL
TPPPDKKIEYIVVNAAECEPYLTCDHRMMLEHSKEIIKGLKVILKLFPNAKGLIGIEDNKPNAIKAMKEAASGEERIEVK
SVKTKYPQGAEKQLIYALIGKEVPSGGLPADAGCIVQNVDTVYEIYNAVVNGKALVSRVVTVTGDAIKEPKNIRFRIGTS
VKELVEAAGGFLEEPYKVISGGPMMGIAMYSLDVPAAKGTSGILCLTKKVAEIEDESNCINCGKCVQVCPMNLIPTKLAV
ASSIRNYDMFNEFNGRDCIECGCCSFICPARRHLLQRIRSGKKAASRKK

Sequences:

>Translated_449_residues
MQLIKCKLRDRRVFMEILTFKNGVHPPHGKHYSENKAIEEYLPEGDIVIPMSQHIGAPAEPIVKKGDRVLVGQKIGEAKG
FISANVHASVSGTVKNVSEITQFNGAKCKAVIIENDGQYEEVETQKRDYTKLSNEEIINIVKEAGIVGMGGATFPTNVKL
TPPPDKKIEYIVVNAAECEPYLTCDHRMMLEHSKEIIKGLKVILKLFPNAKGLIGIEDNKPNAIKAMKEAASGEERIEVK
SVKTKYPQGAEKQLIYALIGKEVPSGGLPADAGCIVQNVDTVYEIYNAVVNGKALVSRVVTVTGDAIKEPKNIRFRIGTS
VKELVEAAGGFLEEPYKVISGGPMMGIAMYSLDVPAAKGTSGILCLTKKVAEIEDESNCINCGKCVQVCPMNLIPTKLAV
ASSIRNYDMFNEFNGRDCIECGCCSFICPARRHLLQRIRSGKKAASRKK
>Mature_449_residues
MQLIKCKLRDRRVFMEILTFKNGVHPPHGKHYSENKAIEEYLPEGDIVIPMSQHIGAPAEPIVKKGDRVLVGQKIGEAKG
FISANVHASVSGTVKNVSEITQFNGAKCKAVIIENDGQYEEVETQKRDYTKLSNEEIINIVKEAGIVGMGGATFPTNVKL
TPPPDKKIEYIVVNAAECEPYLTCDHRMMLEHSKEIIKGLKVILKLFPNAKGLIGIEDNKPNAIKAMKEAASGEERIEVK
SVKTKYPQGAEKQLIYALIGKEVPSGGLPADAGCIVQNVDTVYEIYNAVVNGKALVSRVVTVTGDAIKEPKNIRFRIGTS
VKELVEAAGGFLEEPYKVISGGPMMGIAMYSLDVPAAKGTSGILCLTKKVAEIEDESNCINCGKCVQVCPMNLIPTKLAV
ASSIRNYDMFNEFNGRDCIECGCCSFICPARRHLLQRIRSGKKAASRKK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=430, Percent_Identity=38.8372093023256, Blast_Score=309, Evalue=3e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 49053; Mature: 49053

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLIKCKLRDRRVFMEILTFKNGVHPPHGKHYSENKAIEEYLPEGDIVIPMSQHIGAPAE
CCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEEEECHHHCCCCCC
PIVKKGDRVLVGQKIGEAKGFISANVHASVSGTVKNVSEITQFNGAKCKAVIIENDGQYE
HHHHCCCEEEEECHHCCCCCEEEECEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCHH
EVETQKRDYTKLSNEEIINIVKEAGIVGMGGATFPTNVKLTPPPDKKIEYIVVNAAECEP
HHHHHHHHHHHCCHHHHHHHHHHCCEEECCCCCCCCCCEECCCCCCCEEEEEEEECCCCC
YLTCDHRMMLEHSKEIIKGLKVILKLFPNAKGLIGIEDNKPNAIKAMKEAASGEERIEVK
EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEE
SVKTKYPQGAEKQLIYALIGKEVPSGGLPADAGCIVQNVDTVYEIYNAVVNGKALVSRVV
HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
TVTGDAIKEPKNIRFRIGTSVKELVEAAGGFLEEPYKVISGGPMMGIAMYSLDVPAAKGT
HHCCHHHCCCCCEEEEECCCHHHHHHHHCCHHHCCHHHHCCCCEEEEEEEEECCCCCCCC
SGILCLTKKVAEIEDESNCINCGKCVQVCPMNLIPTKLAVASSIRNYDMFNEFNGRDCIE
CCEEEEHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHCCCCCCHHH
CGCCSFICPARRHLLQRIRSGKKAASRKK
HCCHHHCCHHHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure
MQLIKCKLRDRRVFMEILTFKNGVHPPHGKHYSENKAIEEYLPEGDIVIPMSQHIGAPAE
CCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEEEECHHHCCCCCC
PIVKKGDRVLVGQKIGEAKGFISANVHASVSGTVKNVSEITQFNGAKCKAVIIENDGQYE
HHHHCCCEEEEECHHCCCCCEEEECEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCHH
EVETQKRDYTKLSNEEIINIVKEAGIVGMGGATFPTNVKLTPPPDKKIEYIVVNAAECEP
HHHHHHHHHHHCCHHHHHHHHHHCCEEECCCCCCCCCCEECCCCCCCEEEEEEEECCCCC
YLTCDHRMMLEHSKEIIKGLKVILKLFPNAKGLIGIEDNKPNAIKAMKEAASGEERIEVK
EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEE
SVKTKYPQGAEKQLIYALIGKEVPSGGLPADAGCIVQNVDTVYEIYNAVVNGKALVSRVV
HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
TVTGDAIKEPKNIRFRIGTSVKELVEAAGGFLEEPYKVISGGPMMGIAMYSLDVPAAKGT
HHCCHHHCCCCCEEEEECCCHHHHHHHHCCHHHCCHHHHCCCCEEEEEEEEECCCCCCCC
SGILCLTKKVAEIEDESNCINCGKCVQVCPMNLIPTKLAVASSIRNYDMFNEFNGRDCIE
CCEEEEHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHCCCCCCHHH
CGCCSFICPARRHLLQRIRSGKKAASRKK
HCCHHHCCHHHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]