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The map label for this gene is rnfD [H]

Identifier: 28210725

GI number: 28210725

Start: 1089255

End: 1090187

Strand: Direct

Name: rnfD [H]

Synonym: CTC01020

Alternate gene names: 28210725

Gene position: 1089255-1090187 (Clockwise)

Preceding gene: 28210724

Following gene: 28210726

Centisome position: 38.91

GC content: 34.3

Gene sequence:

>933_bases
ATGTCTGAAACAACAATGTATACAGTGTCATCATCTCCACATATACGTGAAAAAGACACTACACAATCTATAATGAGAGA
TGTTATTATAGCATTATTACCAGCTACAGTTGCAGGTGTATATTTCTTTAAAATGGAAGCATTACTAGTTATACTTGCAT
CAGTAATATCCTGTGTATTAGCGGAATACATATGGCAAAAAGCAACTAAACAAAAAGTTACAATAAGTGACTTAAGTGCA
GTTGTTACAGGATTATTATTAGCATTTAACTTACCGGCATCAGTGCCATTATGGTTACCAGTAATTGGAGGATTTTTCTC
TATTATTATTGTAAAACAATTTTTTGGTGGCTTAGGTCAAAATGTAGTTAACCCAGCATTAGCAGGAAGAGCAATGTTAC
TTGCTTCTTGGCCAGTTCAAATGACAACTTGGACTTTAGATGGAGCTACAACTGCTACACCACTTGCAATATTAAAGGGA
GCTGAAGCAACTGGAGCAACTCTACCAGGAGTAATGGATGCTTTTATAGGACATGTTGGTGGATGTATAGGAGAAACTTC
AGCTTTAGCATTACTTTTAGGCGGAGCTTATCTTCTATATAAAAGAGTAATTGACTGGAAAATACCAGTAACTTTTATAG
GAACTACTTTAATAATAACTGCTATTGCAGGAAGATCAGGAAATGTAATTTATGAATTATTTGTAGGTGGATTAATGATA
GGGGCTATATTTATGGCAACTGACTATGCAACTTGTCCAATTACACCAAAAGGAAGAATTATATTTGGTATTGGATGCGG
AATTATTACTTCTCTTATACGTATATTTGGTGGATATCCAGAAGGAGTATCTTACTCTATACTTATTATGAACTTATTTG
TTCCACTTATAGAAAGATGGACAACACCTAGAACATTTGGGAAGGTGAAGTAA

Upstream 100 bases:

>100_bases
GTTCTTTCATATGTCCAGCAAGAAGACATTTATTGCAAAGAATACGTTCAGGTAAAAAAGCAGCATCTAGAAAGAAATAA
TTTTAGAGAGGTGAATTTTA

Downstream 100 bases:

>100_bases
TATGAAGAAAAATGGTATTTTAAAATTAGGTATTGTTTTATTAATTATAGCAGGTGTCTGTGGATTAATACTTGGTGGTA
TTAATCAAGTAACAGCAGAG

Product: rnfD/nqrB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MSETTMYTVSSSPHIREKDTTQSIMRDVIIALLPATVAGVYFFKMEALLVILASVISCVLAEYIWQKATKQKVTISDLSA
VVTGLLLAFNLPASVPLWLPVIGGFFSIIIVKQFFGGLGQNVVNPALAGRAMLLASWPVQMTTWTLDGATTATPLAILKG
AEATGATLPGVMDAFIGHVGGCIGETSALALLLGGAYLLYKRVIDWKIPVTFIGTTLIITAIAGRSGNVIYELFVGGLMI
GAIFMATDYATCPITPKGRIIFGIGCGIITSLIRIFGGYPEGVSYSILIMNLFVPLIERWTTPRTFGKVK

Sequences:

>Translated_310_residues
MSETTMYTVSSSPHIREKDTTQSIMRDVIIALLPATVAGVYFFKMEALLVILASVISCVLAEYIWQKATKQKVTISDLSA
VVTGLLLAFNLPASVPLWLPVIGGFFSIIIVKQFFGGLGQNVVNPALAGRAMLLASWPVQMTTWTLDGATTATPLAILKG
AEATGATLPGVMDAFIGHVGGCIGETSALALLLGGAYLLYKRVIDWKIPVTFIGTTLIITAIAGRSGNVIYELFVGGLMI
GAIFMATDYATCPITPKGRIIFGIGCGIITSLIRIFGGYPEGVSYSILIMNLFVPLIERWTTPRTFGKVK
>Mature_309_residues
SETTMYTVSSSPHIREKDTTQSIMRDVIIALLPATVAGVYFFKMEALLVILASVISCVLAEYIWQKATKQKVTISDLSAV
VTGLLLAFNLPASVPLWLPVIGGFFSIIIVKQFFGGLGQNVVNPALAGRAMLLASWPVQMTTWTLDGATTATPLAILKGA
EATGATLPGVMDAFIGHVGGCIGETSALALLLGGAYLLYKRVIDWKIPVTFIGTTLIITAIAGRSGNVIYELFVGGLMIG
AIFMATDYATCPITPKGRIIFGIGCGIITSLIRIFGGYPEGVSYSILIMNLFVPLIERWTTPRTFGKVK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=351, Percent_Identity=36.1823361823362, Blast_Score=200, Evalue=9e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 33104; Mature: 32973

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETTMYTVSSSPHIREKDTTQSIMRDVIIALLPATVAGVYFFKMEALLVILASVISCVL
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEYIWQKATKQKVTISDLSAVVTGLLLAFNLPASVPLWLPVIGGFFSIIIVKQFFGGLGQ
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
NVVNPALAGRAMLLASWPVQMTTWTLDGATTATPLAILKGAEATGATLPGVMDAFIGHVG
HHHCHHHHCCCCEEEECCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH
GCIGETSALALLLGGAYLLYKRVIDWKIPVTFIGTTLIITAIAGRSGNVIYELFVGGLMI
HHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GAIFMATDYATCPITPKGRIIFGIGCGIITSLIRIFGGYPEGVSYSILIMNLFVPLIERW
HHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
TTPRTFGKVK
CCCCCCCCCC
>Mature Secondary Structure 
SETTMYTVSSSPHIREKDTTQSIMRDVIIALLPATVAGVYFFKMEALLVILASVISCVL
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEYIWQKATKQKVTISDLSAVVTGLLLAFNLPASVPLWLPVIGGFFSIIIVKQFFGGLGQ
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
NVVNPALAGRAMLLASWPVQMTTWTLDGATTATPLAILKGAEATGATLPGVMDAFIGHVG
HHHCHHHHCCCCEEEECCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH
GCIGETSALALLLGGAYLLYKRVIDWKIPVTFIGTTLIITAIAGRSGNVIYELFVGGLMI
HHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GAIFMATDYATCPITPKGRIIFGIGCGIITSLIRIFGGYPEGVSYSILIMNLFVPLIERW
HHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
TTPRTFGKVK
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA