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The map label for this gene is splB [H]

Identifier: 28210611

GI number: 28210611

Start: 952968

End: 953990

Strand: Direct

Name: splB [H]

Synonym: CTC00900

Alternate gene names: 28210611

Gene position: 952968-953990 (Clockwise)

Preceding gene: 28210610

Following gene: 28210612

Centisome position: 34.04

GC content: 25.81

Gene sequence:

>1023_bases
ATGTTCATTCCAAGAAGAATAATTTTTGAAAAAGGTTCTTTAGATTATGAAATAGGTAAAAATATATATAATACATTTAA
AGATCATAGTGATATTGAAATTATAAAATTAAATTCTAACAAAGTAAAACAACAAATTCCTGGAGATAATTTATATGATT
TTTATAGACAAGGAAAAGGTACTTTAGTGGTTGGAATAAAAAAGGGCTTTAAATTTCAATCATGTAAGCCTTCAGCTCAC
TATCAGTTACCATTAATATCAGGTTGTATAGGACAATGTGAATATTGTTATTTAAATACAAACTTAGGAGATAGACCTTA
TATAAAAGTTAATGCAAACATAGATGATATACTTTGTCAAGCCGAAAAATATATAAATGAAAGATTACCAGAAACAACTA
TATTTGAAGGATCTGCCACTTCAGATCCCATACCTGTTGAACCCTATGTTCATTCTTTAGCAAGAGCAATAGAGTTCTTT
AGTAAATATGATAATGGTAGGTTTAGATTTGTCACAAAATACAATGATGTAGATGGACTACTGAATTTAGTTCACAATGG
TAATACGGAGATAAGATTCACATTAAATACTGATAAAGTAATTAATGAATATGAAAAGGGAACAGCATCAATGGCTAAAA
GAATAAAAGCAAGTATAAAGGTAGCTAAAGCAGGGTACCCTTTAGGTTTTATAATAGCTCCTATATTTTTATATGATAAT
TGGAAAGAAGATTATAGGGAGTTACTATTAAAATTACATGAAGAAATTCCAAAAGATTTAAAATATCCTTTAATATTTGA
AGTTATTTCTCATAGATACACAACAAGAGCTAAGAATATAATATTAGAAGTATTTCCACAAACAACCCTACCAATGAATG
ATGAAGAAAGAAAATATAAATATGGACAATTTGGATATGGTAAATTTATATATACAAAAGAACAATTACATGATATAAAA
TACTTTTTTACAAACGAAATAGAATCAATATTTGAAAATAAAATTATAAAATATATAATATAA

Upstream 100 bases:

>100_bases
AAGTTAACACATGATTAGAATACGCATTTAAAGTTATAGGATAAATTTTTAATGAAATGTAAAGAATAAAAACATATAAA
TTAGTAGAGGAGAGTAAGAT

Downstream 100 bases:

>100_bases
CTTAGAACCTATTCCAAATTATGGATATAGATAAGGATACTAGTAGTAATATTTTTATTGACAATAATATTTAAATAATG
TATTATCTTTAATCAAACAG

Product: spore photoproduct lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MFIPRRIIFEKGSLDYEIGKNIYNTFKDHSDIEIIKLNSNKVKQQIPGDNLYDFYRQGKGTLVVGIKKGFKFQSCKPSAH
YQLPLISGCIGQCEYCYLNTNLGDRPYIKVNANIDDILCQAEKYINERLPETTIFEGSATSDPIPVEPYVHSLARAIEFF
SKYDNGRFRFVTKYNDVDGLLNLVHNGNTEIRFTLNTDKVINEYEKGTASMAKRIKASIKVAKAGYPLGFIIAPIFLYDN
WKEDYRELLLKLHEEIPKDLKYPLIFEVISHRYTTRAKNIILEVFPQTTLPMNDEERKYKYGQFGYGKFIYTKEQLHDIK
YFFTNEIESIFENKIIKYII

Sequences:

>Translated_340_residues
MFIPRRIIFEKGSLDYEIGKNIYNTFKDHSDIEIIKLNSNKVKQQIPGDNLYDFYRQGKGTLVVGIKKGFKFQSCKPSAH
YQLPLISGCIGQCEYCYLNTNLGDRPYIKVNANIDDILCQAEKYINERLPETTIFEGSATSDPIPVEPYVHSLARAIEFF
SKYDNGRFRFVTKYNDVDGLLNLVHNGNTEIRFTLNTDKVINEYEKGTASMAKRIKASIKVAKAGYPLGFIIAPIFLYDN
WKEDYRELLLKLHEEIPKDLKYPLIFEVISHRYTTRAKNIILEVFPQTTLPMNDEERKYKYGQFGYGKFIYTKEQLHDIK
YFFTNEIESIFENKIIKYII
>Mature_340_residues
MFIPRRIIFEKGSLDYEIGKNIYNTFKDHSDIEIIKLNSNKVKQQIPGDNLYDFYRQGKGTLVVGIKKGFKFQSCKPSAH
YQLPLISGCIGQCEYCYLNTNLGDRPYIKVNANIDDILCQAEKYINERLPETTIFEGSATSDPIPVEPYVHSLARAIEFF
SKYDNGRFRFVTKYNDVDGLLNLVHNGNTEIRFTLNTDKVINEYEKGTASMAKRIKASIKVAKAGYPLGFIIAPIFLYDN
WKEDYRELLLKLHEEIPKDLKYPLIFEVISHRYTTRAKNIILEVFPQTTLPMNDEERKYKYGQFGYGKFIYTKEQLHDIK
YFFTNEIESIFENKIIKYII

Specific function: Involved in repair of UV radiation-induced DNA damage during spore germination. Can repair thymine dimer 5-thyminyl-5,6- dihydrothymine (known as spore photoproduct (SP)) by in situ monomerization of SP to two thymines [H]

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. SPL family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: =4.1.99.14 [H]

Molecular weight: Translated: 39692; Mature: 39692

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIPRRIIFEKGSLDYEIGKNIYNTFKDHSDIEIIKLNSNKVKQQIPGDNLYDFYRQGKG
CCCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCHHHHHHHCCCC
TLVVGIKKGFKFQSCKPSAHYQLPLISGCIGQCEYCYLNTNLGDRPYIKVNANIDDILCQ
EEEEEECCCCEECCCCCCCCEECHHHHHCCCCCEEEEEECCCCCCCEEEEECCHHHHHHH
AEKYINERLPETTIFEGSATSDPIPVEPYVHSLARAIEFFSKYDNGRFRFVTKYNDVDGL
HHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH
LNLVHNGNTEIRFTLNTDKVINEYEKGTASMAKRIKASIKVAKAGYPLGFIIAPIFLYDN
HHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCC
WKEDYRELLLKLHEEIPKDLKYPLIFEVISHRYTTRAKNIILEVFPQTTLPMNDEERKYK
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHEE
YGQFGYGKFIYTKEQLHDIKYFFTNEIESIFENKIIKYII
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFIPRRIIFEKGSLDYEIGKNIYNTFKDHSDIEIIKLNSNKVKQQIPGDNLYDFYRQGKG
CCCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCHHHHHHHCCCC
TLVVGIKKGFKFQSCKPSAHYQLPLISGCIGQCEYCYLNTNLGDRPYIKVNANIDDILCQ
EEEEEECCCCEECCCCCCCCEECHHHHHCCCCCEEEEEECCCCCCCEEEEECCHHHHHHH
AEKYINERLPETTIFEGSATSDPIPVEPYVHSLARAIEFFSKYDNGRFRFVTKYNDVDGL
HHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH
LNLVHNGNTEIRFTLNTDKVINEYEKGTASMAKRIKASIKVAKAGYPLGFIIAPIFLYDN
HHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCC
WKEDYRELLLKLHEEIPKDLKYPLIFEVISHRYTTRAKNIILEVFPQTTLPMNDEERKYK
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHEE
YGQFGYGKFIYTKEQLHDIKYFFTNEIESIFENKIIKYII
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]