| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
Click here to switch to the map view.
The map label for this gene is 28210486
Identifier: 28210486
GI number: 28210486
Start: 805142
End: 806728
Strand: Direct
Name: 28210486
Synonym: CTC00767
Alternate gene names: NA
Gene position: 805142-806728 (Clockwise)
Preceding gene: 28210485
Following gene: 28210487
Centisome position: 28.76
GC content: 31.44
Gene sequence:
>1587_bases TTGGAAAAGAAAAAAAGTTTTAAGGGTATCATAGTCTTTCTTATATTGGCTATTACTCTTGGAGGATTTGGCTATAGAAA TAGTGATATCTATAGAAGAAAATCACTTAAGAAAAAAATTCATGCTGCATCTCAAAAAACTATACAGTATTACTATGATG AATATAAACCACAGCAATTTGCAGGTATATTAGATTGGCCGGCATTGGGGCTATATGGCTTAGGAGAAGACGTAAGTGGA GAAGTTTGGACTGTGAATGGTAAAAATGGAGCCTATTGGAGAGAACAGCAAGTAAAATCAGGAGATGGTCTTTCCAAGAC AAAGAACACAGACTATCAAAGAACGATAATAGGAATAACTTCCGCTAATAAAGATCCTAGGAATTTTGGAGGAGTTAACT TAGTAAAAGATGTTAAGAAAACTATGTTAAATAATGGGCATTTTGCAGATTCTGTAGAAGATAGAAGAACCAAAAAACCA ATAGGAGATGACCTTATAAATGCTCAATGTTTTGGGATTATAGCCCTTCATTGTGCTGGTGAACCCATACCAAATAGAGA TAAGGCAATAAGATGGTTAGAGAAAAATCAACATATAGATGGGGGATTTACTTGGGATGTAAAGGATTATGACAATAAGG AAGATTATCAAAAAGTTGTATCCGATGTAGATATGACAGCAGCCGTACTTATGGCTTTTAGTATATTGGGAGTTGATAAA GAATATCCAGCAGTAAGAAGAGCATTAGAATTTATAGAAAAACAGCAGCTTGAGAATGGTGGTTTTAAATCTTGGGGAGT AGAAAACCCTGAAAGTACAGTATGGGCTATGCAGGCACTTTTAATGTATGGAGAAAATCCATTAACTAATAAATGGGCAA AAGGTAAGGAGAAGAGTAGTCCTATAGACTTTATTTTAAAACACCAATTAGAAAATGGAGCCTTTACTCATGTATTAGAT GAAAAAGACATGTTGCCAGTATATGACAATAGCATGACTACTTATGAATGTCTATATGGTATGGCAGATGCTTATAATGA GGAAACAACTTATAGTAAACTATTTAAAGCCAATAAACCAAAGGCAGAAAAAGTATTATTTAATGATTTTAAAGAAAAAG ACTATGGCTATGTTGAGGCAGTACAAATGGCATATGATTATATAATGGATATTTATAGTGATGGGACATTTAAGCCAAAT AAAAATATAACAAAAGGTGAATTAGCTAGATACTTAGTAAATGCATTAAATCTTCAAGGAGAATTTTATAACAAATATAG TGGTGATGAATTAAGATTTGTTAGAGAAAATAGGAAATCTGATGTATTAGCAATAGATAAAGATGAAAATTATATAGAAC TTTGCATAGAAAAAGAATTATTTAAGGGGATATCATCTTTAAATAAAAAAGGAGATAAAGATAAAAAAATTATAGGAAGT GAGCTTATAACAGCATTGGAAAATGGAGCAAAACTTAAAAATGTAAATAAAGATAAACTTGTATTTAACAATTTCAGTAC CAGTGAAACTGTCAATAGAGCACAATGTGCGATAAGTTTTTCAAGATTTAGACAATTGATGAAATAA
Upstream 100 bases:
>100_bases TCCTATATTAATTTAGATTTTATATTATTACCATTAGCATTTTTAATATTTTTAATTGATATATTTTTAAGATTTAACTA TTAAAGGAGGCAACAAGGCA
Downstream 100 bases:
>100_bases GTCTGCTCCATATCCATGTTGTTTATATAAATATATACGTTTTTAATTATATCAAATTTATAAGTTTTGAAAAAGAGGAG GTAGGTATATTTAGAGATAC
Product: peptide binding domain-containing protein
Products: NA
Alternate protein names: Copper Amine Oxidase Domain Protein; Prenyltransferase/Squalene Oxidase; Cell Wall Anchor Domain-Containing Protein; S-Layer Domain Protein; N-Acetylmuramoyl-L-Alanine Amidase; Copper Amine Oxidase Domain-Containing Protein
Number of amino acids: Translated: 528; Mature: 528
Protein sequence:
>528_residues MEKKKSFKGIIVFLILAITLGGFGYRNSDIYRRKSLKKKIHAASQKTIQYYYDEYKPQQFAGILDWPALGLYGLGEDVSG EVWTVNGKNGAYWREQQVKSGDGLSKTKNTDYQRTIIGITSANKDPRNFGGVNLVKDVKKTMLNNGHFADSVEDRRTKKP IGDDLINAQCFGIIALHCAGEPIPNRDKAIRWLEKNQHIDGGFTWDVKDYDNKEDYQKVVSDVDMTAAVLMAFSILGVDK EYPAVRRALEFIEKQQLENGGFKSWGVENPESTVWAMQALLMYGENPLTNKWAKGKEKSSPIDFILKHQLENGAFTHVLD EKDMLPVYDNSMTTYECLYGMADAYNEETTYSKLFKANKPKAEKVLFNDFKEKDYGYVEAVQMAYDYIMDIYSDGTFKPN KNITKGELARYLVNALNLQGEFYNKYSGDELRFVRENRKSDVLAIDKDENYIELCIEKELFKGISSLNKKGDKDKKIIGS ELITALENGAKLKNVNKDKLVFNNFSTSETVNRAQCAISFSRFRQLMK
Sequences:
>Translated_528_residues MEKKKSFKGIIVFLILAITLGGFGYRNSDIYRRKSLKKKIHAASQKTIQYYYDEYKPQQFAGILDWPALGLYGLGEDVSG EVWTVNGKNGAYWREQQVKSGDGLSKTKNTDYQRTIIGITSANKDPRNFGGVNLVKDVKKTMLNNGHFADSVEDRRTKKP IGDDLINAQCFGIIALHCAGEPIPNRDKAIRWLEKNQHIDGGFTWDVKDYDNKEDYQKVVSDVDMTAAVLMAFSILGVDK EYPAVRRALEFIEKQQLENGGFKSWGVENPESTVWAMQALLMYGENPLTNKWAKGKEKSSPIDFILKHQLENGAFTHVLD EKDMLPVYDNSMTTYECLYGMADAYNEETTYSKLFKANKPKAEKVLFNDFKEKDYGYVEAVQMAYDYIMDIYSDGTFKPN KNITKGELARYLVNALNLQGEFYNKYSGDELRFVRENRKSDVLAIDKDENYIELCIEKELFKGISSLNKKGDKDKKIIGS ELITALENGAKLKNVNKDKLVFNNFSTSETVNRAQCAISFSRFRQLMK >Mature_528_residues MEKKKSFKGIIVFLILAITLGGFGYRNSDIYRRKSLKKKIHAASQKTIQYYYDEYKPQQFAGILDWPALGLYGLGEDVSG EVWTVNGKNGAYWREQQVKSGDGLSKTKNTDYQRTIIGITSANKDPRNFGGVNLVKDVKKTMLNNGHFADSVEDRRTKKP IGDDLINAQCFGIIALHCAGEPIPNRDKAIRWLEKNQHIDGGFTWDVKDYDNKEDYQKVVSDVDMTAAVLMAFSILGVDK EYPAVRRALEFIEKQQLENGGFKSWGVENPESTVWAMQALLMYGENPLTNKWAKGKEKSSPIDFILKHQLENGAFTHVLD EKDMLPVYDNSMTTYECLYGMADAYNEETTYSKLFKANKPKAEKVLFNDFKEKDYGYVEAVQMAYDYIMDIYSDGTFKPN KNITKGELARYLVNALNLQGEFYNKYSGDELRFVRENRKSDVLAIDKDENYIELCIEKELFKGISSLNKKGDKDKKIIGS ELITALENGAKLKNVNKDKLVFNNFSTSETVNRAQCAISFSRFRQLMK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60267; Mature: 60267
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKKKSFKGIIVFLILAITLGGFGYRNSDIYRRKSLKKKIHAASQKTIQYYYDEYKPQQF CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH AGILDWPALGLYGLGEDVSGEVWTVNGKNGAYWREQQVKSGDGLSKTKNTDYQRTIIGIT CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEEE SANKDPRNFGGVNLVKDVKKTMLNNGHFADSVEDRRTKKPIGDDLINAQCFGIIALHCAG CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHCCHHHEEEEEEECC EPIPNRDKAIRWLEKNQHIDGGFTWDVKDYDNKEDYQKVVSDVDMTAAVLMAFSILGVDK CCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC EYPAVRRALEFIEKQQLENGGFKSWGVENPESTVWAMQALLMYGENPLTNKWAKGKEKSS CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHCCCCCCC PIDFILKHQLENGAFTHVLDEKDMLPVYDNSMTTYECLYGMADAYNEETTYSKLFKANKP CHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCC KAEKVLFNDFKEKDYGYVEAVQMAYDYIMDIYSDGTFKPNKNITKGELARYLVNALNLQG HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC EFYNKYSGDELRFVRENRKSDVLAIDKDENYIELCIEKELFKGISSLNKKGDKDKKIIGS HHHCCCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH ELITALENGAKLKNVNKDKLVFNNFSTSETVNRAQCAISFSRFRQLMK HHHHHHHCCCHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MEKKKSFKGIIVFLILAITLGGFGYRNSDIYRRKSLKKKIHAASQKTIQYYYDEYKPQQF CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH AGILDWPALGLYGLGEDVSGEVWTVNGKNGAYWREQQVKSGDGLSKTKNTDYQRTIIGIT CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEEE SANKDPRNFGGVNLVKDVKKTMLNNGHFADSVEDRRTKKPIGDDLINAQCFGIIALHCAG CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHCCHHHEEEEEEECC EPIPNRDKAIRWLEKNQHIDGGFTWDVKDYDNKEDYQKVVSDVDMTAAVLMAFSILGVDK CCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC EYPAVRRALEFIEKQQLENGGFKSWGVENPESTVWAMQALLMYGENPLTNKWAKGKEKSS CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHCCCCCCC PIDFILKHQLENGAFTHVLDEKDMLPVYDNSMTTYECLYGMADAYNEETTYSKLFKANKP CHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCC KAEKVLFNDFKEKDYGYVEAVQMAYDYIMDIYSDGTFKPNKNITKGELARYLVNALNLQG HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC EFYNKYSGDELRFVRENRKSDVLAIDKDENYIELCIEKELFKGISSLNKKGDKDKKIIGS HHHCCCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH ELITALENGAKLKNVNKDKLVFNNFSTSETVNRAQCAISFSRFRQLMK HHHHHHHCCCHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA