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The map label for this gene is ydeE [H]

Identifier: 28210368

GI number: 28210368

Start: 658267

End: 659250

Strand: Direct

Name: ydeE [H]

Synonym: CTC00639

Alternate gene names: 28210368

Gene position: 658267-659250 (Clockwise)

Preceding gene: 28210367

Following gene: 28210369

Centisome position: 23.52

GC content: 34.25

Gene sequence:

>984_bases
TTGTCAAATAGTAATTTGATGTACAGGTTATTAATAATCTTTCAGACAAGACAAAACATAACACAAAAAGTCGGGAACAA
TCGCTTGAAAAAAGATAAGATATATGTACAGACAGGGGTGATGATTATGGAGTGGATTGAAGGAATCGATGAAGTTATCA
ACTATATTGAGGAGAATATTACTGAAGAAATCACAATAAAAAATATTGCAAAAAAAACATTTATGTCTCCGTTCTATTTC
CAAAAAGGCTTTGCAATGCTTTGTGGTTTTACGGTCGGAGAGTACATCAGACAACGCAGGCTTACCCTTGCGGGCAGTGA
GCTTGTTTCTACTGATGAAAAAATCATTGATATTGCACTGAAATATGGCTATGCCTCACCAGATAGCTTCACAAAAGCTT
TTACTCGATTTCATGGTGTAACACCTACTGCTGTTCGAAAAGATGGAGCAATGATTAAATCTTTTGCTCCACTGAAAATC
AAATTTTTATTGGAAGGCGGTTATATTATGGATTACAAAATTGTTAAAAAAGATTCGTTTACTATCATTGGAGTATCAAA
GGTGTTTAAATATGATAGTGCAGCTACAGAAATTCCACAGTTTTGGACAGAACATTATCAAACAGGAAAAGAAAAATTTG
TATGCGGAATGTACGGAGTATGCATAGATGAGAGCATGGGTTCAGATGAGTTTGAATATTTGATTGCAGACAATTATAAT
CCGTCCATAGAAATACCTAATGGTTTTGTTACAAAGATTATTCCTAAACACACGTGGGCTGTTTTTGCTTGCAAAGGTGC
AATGCCGAAATCTCTGCAAGATGGGAATAGAAAAATCTTTTCAGAATGGTTACCTAATTGCAAGGATTATGAAATCGCAG
CAGGTTATTATATTGAAATGTACACTAATGTAGCTGATTATCCACAAGGTATTCAAGATGAAAACTACTATAGTGAAATT
TGGATTCCTGTTAAGAAAAAGTAA

Upstream 100 bases:

>100_bases
TCATTGCAACAACAATAAAATTAAGTGTAGTTAAAAGATTATATGATATGTTGGATTGTTAATTTTAATGCTAACTGTTA
GGTTATGAACATAATACAAA

Downstream 100 bases:

>100_bases
TTACGTAAAATAGGATAAATTGGAGTTCATCAAATTTCCAATTTGAAGAGTAGAAGTAACATAATTTTAGTTTAAAGGAT
AGCGTATCCTTCTTAAGCTA

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MSNSNLMYRLLIIFQTRQNITQKVGNNRLKKDKIYVQTGVMIMEWIEGIDEVINYIEENITEEITIKNIAKKTFMSPFYF
QKGFAMLCGFTVGEYIRQRRLTLAGSELVSTDEKIIDIALKYGYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKI
KFLLEGGYIMDYKIVKKDSFTIIGVSKVFKYDSAATEIPQFWTEHYQTGKEKFVCGMYGVCIDESMGSDEFEYLIADNYN
PSIEIPNGFVTKIIPKHTWAVFACKGAMPKSLQDGNRKIFSEWLPNCKDYEIAAGYYIEMYTNVADYPQGIQDENYYSEI
WIPVKKK

Sequences:

>Translated_327_residues
MSNSNLMYRLLIIFQTRQNITQKVGNNRLKKDKIYVQTGVMIMEWIEGIDEVINYIEENITEEITIKNIAKKTFMSPFYF
QKGFAMLCGFTVGEYIRQRRLTLAGSELVSTDEKIIDIALKYGYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKI
KFLLEGGYIMDYKIVKKDSFTIIGVSKVFKYDSAATEIPQFWTEHYQTGKEKFVCGMYGVCIDESMGSDEFEYLIADNYN
PSIEIPNGFVTKIIPKHTWAVFACKGAMPKSLQDGNRKIFSEWLPNCKDYEIAAGYYIEMYTNVADYPQGIQDENYYSEI
WIPVKKK
>Mature_326_residues
SNSNLMYRLLIIFQTRQNITQKVGNNRLKKDKIYVQTGVMIMEWIEGIDEVINYIEENITEEITIKNIAKKTFMSPFYFQ
KGFAMLCGFTVGEYIRQRRLTLAGSELVSTDEKIIDIALKYGYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIK
FLLEGGYIMDYKIVKKDSFTIIGVSKVFKYDSAATEIPQFWTEHYQTGKEKFVCGMYGVCIDESMGSDEFEYLIADNYNP
SIEIPNGFVTKIIPKHTWAVFACKGAMPKSLQDGNRKIFSEWLPNCKDYEIAAGYYIEMYTNVADYPQGIQDENYYSEIW
IPVKKK

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=98, Percent_Identity=40.8163265306122, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790857, Length=159, Percent_Identity=28.3018867924528, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37644; Mature: 37513

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSNLMYRLLIIFQTRQNITQKVGNNRLKKDKIYVQTGVMIMEWIEGIDEVINYIEENI
CCCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC
TEEITIKNIAKKTFMSPFYFQKGFAMLCGFTVGEYIRQRRLTLAGSELVSTDEKIIDIAL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHH
KYGYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKFLLEGGYIMDYKIVKKDSF
HCCCCCCHHHHHHHHHHCCCCCHHCCCCCCHHHCCCCEEEEEEEECCEEEEEEEEECCCE
TIIGVSKVFKYDSAATEIPQFWTEHYQTGKEKFVCGMYGVCIDESMGSDEFEYLIADNYN
EEEEHHHHHHCCCHHHHHHHHHHHHHHCCCHHEEHHHHCEEECCCCCCCCEEEEEECCCC
PSIEIPNGFVTKIIPKHTWAVFACKGAMPKSLQDGNRKIFSEWLPNCKDYEIAAGYYIEM
CCEECCCCCEEHHCCCCCEEEEEECCCCCCCHHCCCHHHHHHHCCCCCCEEEECCEEEEE
YTNVADYPQGIQDENYYSEIWIPVKKK
ECCHHCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure 
SNSNLMYRLLIIFQTRQNITQKVGNNRLKKDKIYVQTGVMIMEWIEGIDEVINYIEENI
CCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC
TEEITIKNIAKKTFMSPFYFQKGFAMLCGFTVGEYIRQRRLTLAGSELVSTDEKIIDIAL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHH
KYGYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKFLLEGGYIMDYKIVKKDSF
HCCCCCCHHHHHHHHHHCCCCCHHCCCCCCHHHCCCCEEEEEEEECCEEEEEEEEECCCE
TIIGVSKVFKYDSAATEIPQFWTEHYQTGKEKFVCGMYGVCIDESMGSDEFEYLIADNYN
EEEEHHHHHHCCCHHHHHHHHHHHHHHCCCHHEEHHHHCEEECCCCCCCCEEEEEECCCC
PSIEIPNGFVTKIIPKHTWAVFACKGAMPKSLQDGNRKIFSEWLPNCKDYEIAAGYYIEM
CCEECCCCCEEHHCCCCCEEEEEECCCCCCCHHCCCHHHHHHHCCCCCCEEEECCEEEEE
YTNVADYPQGIQDENYYSEIWIPVKKK
ECCHHCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]