Definition Clostridium tetani E88 chromosome, complete genome.
Accession NC_004557
Length 2,799,251

Click here to switch to the map view.

The map label for this gene is 28210367

Identifier: 28210367

GI number: 28210367

Start: 657839

End: 658228

Strand: Direct

Name: 28210367

Synonym: CTC00638

Alternate gene names: NA

Gene position: 657839-658228 (Clockwise)

Preceding gene: 28210366

Following gene: 28210368

Centisome position: 23.5

GC content: 25.38

Gene sequence:

>390_bases
TTGGAAACCAATTTATCATATTTGGAAACAGTGACTAAGATACATAATATTATATTTCAAGAAATAGGTGTTGAATTATC
AGCCATCATAAAAACAAAAGAAGAAATTGCAATTGAAGAAAATCCATTTGATGATTCTTATGATTTTTCAAGAATTCATT
TGGTTTTTACCAATAATCAAATAGATAATATAAAAGTTAAAAAGTTAAAAGAGACTGTTTTTGAAGGTGAAATTTTTAGT
GCTGGTAACGAGTGCTTTTATATGTACTTGCCCAGATATGCTACAAAGAAAAGACTGAATAATAATTATTTGGAAATACA
AATGGATATCATTGCAACAACAATAAAATTAAGTGTAGTTAAAAGATTATATGATATGTTGGATTGTTAA

Upstream 100 bases:

>100_bases
GGGAAAAATAGAATACCTAAAATGACATGTTTAGTTGAAATACTAAAAAAATGCAGGCTTTGAACATGTACAAACATATA
TTCAAAGTGGGAATATATTA

Downstream 100 bases:

>100_bases
TTTTAATGCTAACTGTTAGGTTATGAACATAATACAAATTGTCAAATAGTAATTTGATGTACAGGTTATTAATAATCTTT
CAGACAAGACAAAACATAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
METNLSYLETVTKIHNIIFQEIGVELSAIIKTKEEIAIEENPFDDSYDFSRIHLVFTNNQIDNIKVKKLKETVFEGEIFS
AGNECFYMYLPRYATKKRLNNNYLEIQMDIIATTIKLSVVKRLYDMLDC

Sequences:

>Translated_129_residues
METNLSYLETVTKIHNIIFQEIGVELSAIIKTKEEIAIEENPFDDSYDFSRIHLVFTNNQIDNIKVKKLKETVFEGEIFS
AGNECFYMYLPRYATKKRLNNNYLEIQMDIIATTIKLSVVKRLYDMLDC
>Mature_129_residues
METNLSYLETVTKIHNIIFQEIGVELSAIIKTKEEIAIEENPFDDSYDFSRIHLVFTNNQIDNIKVKKLKETVFEGEIFS
AGNECFYMYLPRYATKKRLNNNYLEIQMDIIATTIKLSVVKRLYDMLDC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15143; Mature: 15143

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METNLSYLETVTKIHNIIFQEIGVELSAIIKTKEEIAIEENPFDDSYDFSRIHLVFTNNQ
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECCCCCCCCCCCEEEEEEEECCC
IDNIKVKKLKETVFEGEIFSAGNECFYMYLPRYATKKRLNNNYLEIQMDIIATTIKLSVV
CCCCHHHHHHHHHHCCHHCCCCCCEEEEECCCHHHHHHCCCCEEEEEHHHHHHHHHHHHH
KRLYDMLDC
HHHHHHHCC
>Mature Secondary Structure
METNLSYLETVTKIHNIIFQEIGVELSAIIKTKEEIAIEENPFDDSYDFSRIHLVFTNNQ
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECCCCCCCCCCCEEEEEEEECCC
IDNIKVKKLKETVFEGEIFSAGNECFYMYLPRYATKKRLNNNYLEIQMDIIATTIKLSVV
CCCCHHHHHHHHHHCCHHCCCCCCEEEEECCCHHHHHHCCCCEEEEEHHHHHHHHHHHHH
KRLYDMLDC
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA