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The map label for this gene is yndF [H]

Identifier: 28210049

GI number: 28210049

Start: 271160

End: 272344

Strand: Direct

Name: yndF [H]

Synonym: CTC00287

Alternate gene names: 28210049

Gene position: 271160-272344 (Clockwise)

Preceding gene: 28210048

Following gene: 28210050

Centisome position: 9.69

GC content: 26.84

Gene sequence:

>1185_bases
TTGAATAAGAAAGTTTTCATAGGATTTTTTATAATTATTATAAGTTTTTTTATTAGTGGATGCTGGGATAAGGTAGAAAT
AGATAAGAGAATATTTGTGTCTACTCTTGGTATAGATGCAGGAGAAGATATAGAAAGAAAAGAAGAAATTAAAGAAATTA
AATCAAATGAACCTTTTACTGATAATTACATAAAAAAATTAAGAGTAGTATATGGATATCCAGATGTAAGCGAGTTAAAG
CCTGAAAAGGGAGGAGAAGCAAAAGAAAAAAATATAACTATTGATTCTTATTCTATGGAAGATGCATATACTAAAGCCAT
AAGTAAAAGTAGTAGAGATATAAGTTTTGGTCATTTGAAGTTACTTATTTTAAGTAAAGATATTTTTCAATATCCAGATA
CTATAAAAGAGGTTGTAGACTATCTTCAACGAGAACCTGCTATTACTAGAGATATGCTTGTAGTAGCATGTGATGGAGAG
GTTAAAAATTATATTGATTTTGAGCCTGACACGGAAAAAAATCTTCACAATTATATAGTGGGATTAATAGAAAACAGCGA
TAGAAATAGTAACATAATTCCTATCAGTTTTAACAGATTTATGCAGGAAATAAATGAAGAAGGAAATATTATACTACCTT
TATTAACCATGAGTAAAAGTGAGAAAGGAGTAGAATTATCTAATTCATGTATTATAAAAGACTTTAAATTTGAAAACATA
CTATCTTCCTCACAAACAGCTGGCATTAAGATGCTAACAGGTAAATATAAAAGTGGAAATAAAGTTATTTATAAAGATGG
TCATCCTATAGACTTACTTATAGAGAATACAGAAAAGAAAAATGTTTTAAAATCAAAGTCAGATGAAAAATTAAATATTG
CTATAAATATAAGTTTAGAAGGACAAATAAGGGGATACTATTTAGGAAAGGAATTTATAGACAAAGACACTTTAAAAGAA
ATAGAAGAAAGTTTTAATGAGTCTATTAGGAAAGAGTTAGAAAGATTAATAGAATCAACGCAAAAAAAATATAATGCAGA
TTTAACAGACACGGGTAAATATTTAAAAAAATATCATCCTAGTACATGGAATAAAGTAAAGGATAATTGGGGTGAAATAT
ATAAAGATGCAAATATAGAGGTTAATGTAAAGACATATATAAGAAGAATAGGGGCTATAAAATAA

Upstream 100 bases:

>100_bases
ACTCAAAAACTTATTCCTACTATGTTTATAATAAATATGATAATTATTCCCTTTCTCATAATAATTTTAAATAGTGTGAA
GAGGGGAGGAAGGAAGAACG

Downstream 100 bases:

>100_bases
AAAGTGAAATGAATATAATTAAAATTAATGGTAATAATAACAAATAGTTCAATATAAGATGTGTAAGGGGGATTATAAAT
TGAAAAATAAACTATTTGCT

Product: spore germination protein A3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MNKKVFIGFFIIIISFFISGCWDKVEIDKRIFVSTLGIDAGEDIERKEEIKEIKSNEPFTDNYIKKLRVVYGYPDVSELK
PEKGGEAKEKNITIDSYSMEDAYTKAISKSSRDISFGHLKLLILSKDIFQYPDTIKEVVDYLQREPAITRDMLVVACDGE
VKNYIDFEPDTEKNLHNYIVGLIENSDRNSNIIPISFNRFMQEINEEGNIILPLLTMSKSEKGVELSNSCIIKDFKFENI
LSSSQTAGIKMLTGKYKSGNKVIYKDGHPIDLLIENTEKKNVLKSKSDEKLNIAINISLEGQIRGYYLGKEFIDKDTLKE
IEESFNESIRKELERLIESTQKKYNADLTDTGKYLKKYHPSTWNKVKDNWGEIYKDANIEVNVKTYIRRIGAIK

Sequences:

>Translated_394_residues
MNKKVFIGFFIIIISFFISGCWDKVEIDKRIFVSTLGIDAGEDIERKEEIKEIKSNEPFTDNYIKKLRVVYGYPDVSELK
PEKGGEAKEKNITIDSYSMEDAYTKAISKSSRDISFGHLKLLILSKDIFQYPDTIKEVVDYLQREPAITRDMLVVACDGE
VKNYIDFEPDTEKNLHNYIVGLIENSDRNSNIIPISFNRFMQEINEEGNIILPLLTMSKSEKGVELSNSCIIKDFKFENI
LSSSQTAGIKMLTGKYKSGNKVIYKDGHPIDLLIENTEKKNVLKSKSDEKLNIAINISLEGQIRGYYLGKEFIDKDTLKE
IEESFNESIRKELERLIESTQKKYNADLTDTGKYLKKYHPSTWNKVKDNWGEIYKDANIEVNVKTYIRRIGAIK
>Mature_394_residues
MNKKVFIGFFIIIISFFISGCWDKVEIDKRIFVSTLGIDAGEDIERKEEIKEIKSNEPFTDNYIKKLRVVYGYPDVSELK
PEKGGEAKEKNITIDSYSMEDAYTKAISKSSRDISFGHLKLLILSKDIFQYPDTIKEVVDYLQREPAITRDMLVVACDGE
VKNYIDFEPDTEKNLHNYIVGLIENSDRNSNIIPISFNRFMQEINEEGNIILPLLTMSKSEKGVELSNSCIIKDFKFENI
LSSSQTAGIKMLTGKYKSGNKVIYKDGHPIDLLIENTEKKNVLKSKSDEKLNIAINISLEGQIRGYYLGKEFIDKDTLKE
IEESFNESIRKELERLIESTQKKYNADLTDTGKYLKKYHPSTWNKVKDNWGEIYKDANIEVNVKTYIRRIGAIK

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 45396; Mature: 45396

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKVFIGFFIIIISFFISGCWDKVEIDKRIFVSTLGIDAGEDIERKEEIKEIKSNEPFT
CCCEEEHHHHHHHHHHHHHCCCCCEECCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCC
DNYIKKLRVVYGYPDVSELKPEKGGEAKEKNITIDSYSMEDAYTKAISKSSRDISFGHLK
HHHHHHEEEEECCCCHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCEECEEE
LLILSKDIFQYPDTIKEVVDYLQREPAITRDMLVVACDGEVKNYIDFEPDTEKNLHNYIV
EEEEECHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHEE
GLIENSDRNSNIIPISFNRFMQEINEEGNIILPLLTMSKSEKGVELSNSCIIKDFKFENI
EEEECCCCCCCEEEEEHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCHHHH
LSSSQTAGIKMLTGKYKSGNKVIYKDGHPIDLLIENTEKKNVLKSKSDEKLNIAINISLE
HCCCCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCCHHHHHHCCCCCEEEEEEEEEEE
GQIRGYYLGKEFIDKDTLKEIEESFNESIRKELERLIESTQKKYNADLTDTGKYLKKYHP
CEEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
STWNKVKDNWGEIYKDANIEVNVKTYIRRIGAIK
CCHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCC
>Mature Secondary Structure
MNKKVFIGFFIIIISFFISGCWDKVEIDKRIFVSTLGIDAGEDIERKEEIKEIKSNEPFT
CCCEEEHHHHHHHHHHHHHCCCCCEECCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCC
DNYIKKLRVVYGYPDVSELKPEKGGEAKEKNITIDSYSMEDAYTKAISKSSRDISFGHLK
HHHHHHEEEEECCCCHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCEECEEE
LLILSKDIFQYPDTIKEVVDYLQREPAITRDMLVVACDGEVKNYIDFEPDTEKNLHNYIV
EEEEECHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHEE
GLIENSDRNSNIIPISFNRFMQEINEEGNIILPLLTMSKSEKGVELSNSCIIKDFKFENI
EEEECCCCCCCEEEEEHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCHHHH
LSSSQTAGIKMLTGKYKSGNKVIYKDGHPIDLLIENTEKKNVLKSKSDEKLNIAINISLE
HCCCCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCCHHHHHHCCCCCEEEEEEEEEEE
GQIRGYYLGKEFIDKDTLKEIEESFNESIRKELERLIESTQKKYNADLTDTGKYLKKYHP
CEEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
STWNKVKDNWGEIYKDANIEVNVKTYIRRIGAIK
CCHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]