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The map label for this gene is gerBA [H]

Identifier: 28210047

GI number: 28210047

Start: 268565

End: 270043

Strand: Direct

Name: gerBA [H]

Synonym: CTC00285

Alternate gene names: 28210047

Gene position: 268565-270043 (Clockwise)

Preceding gene: 28210046

Following gene: 28210048

Centisome position: 9.59

GC content: 30.76

Gene sequence:

>1479_bases
GTGGTCATGGGTATAAATATAAAAGATGAAATAAGTAAGGATCTAGAAGAAAATTTAAAATACTTAAAAGAAATTTTTAA
AGATAATTCAGATATGATATTTAGAGAATTTTATATGGGGGAAGTTAAAAGTTTAATTGTATATATAGATGGAATGGCAG
ATAAAAATTTATTAAATGATTTTGTGTTGGAAAATTTAATGGATAGAGATAGGTCATTGAAAGAGGAAGACTTTAATAAA
GAAACACTAAAAAATAAATTTCTAACAGTATCTGATTTAAATGAAATAGATAGTCTTAAAAAAGGTATAGACTCTATGCT
ATCTGGAGATACTCTTATGCTAGTAAATGGGTTAGATATTGCCTATGTATTATCCACAAGATTTTGGCCAACAAGGGGAG
TGACTGAACCATCTGGAGAAACTGTATTAAGAGGTTCTAGGGATGGCTTTACAGAGACCATAAGGTTTAATACTGCATTG
GTTAGAAGAAGAATAAAAGATACAGGATTTAAAATAGTTCCTAAACAACTGGGCACTAGATCAAAAACAGACATAGCAGT
TATGTATATAGATGATATAGCTAATGAAGACATAGTAGATGAAGTTTTTAAAAGATTAGATAAAATAGACATTGATGCAG
TTCTAGATAGTGGATATGTAGAACAATTAATAGAGGATAATGAATGGTCAATTTTTCCGCAAACACAAAGTACAGAAAGA
CCTGATGTAGTAGCGGCAAGTTTATACGAAGGAAGAGTGTCTATATTAGTGGACAATTCCCCTTTTGCTATTGTTGTTCC
AGCTACATTACCTGCTTTATTTCAGTCGCCAGACGATTATTATCAAAGATGGATATATGGATCCATATTAAGATTAATAC
GAATGGTATCCATTTTTCTATCTGTATTATTACCTTCATTATATGTAGCTACAACATCTTTTCATCCATCTATAATTCCT
ACAAGACTTGCTTATTTTATAGCATCTTCTAGAGAGGGAGTGCCATTTCCAGCATTTATAGAAGCTATTATCATGGAGAT
AAGTTTAGCTTTGCTTATGGAATCTGTGGTAAGGCTACCAAAGGCTATAGGATCTACTATAGGTATAGTGGGAGGTCTTA
TAATAGGGCAAGCGGCAGTTAGTGCAGGTATAGTAAGTCCAATAATGATAATAATAGTTTCTTTAACTGCCATAACTAGC
TTTACAACTCCTAACTATGAAATAAATTCTGCGTTTAGGATTGTAAGATTCGCTTTAATAATACTTGCATCTATTATGGG
GTTATATGGAATAATGATAGGGCTTATAATTCTTTTAGTTCACATGATAAAGTTAAAGAGTTTTGGATTAGGATACTTAC
TACCTATAGTAAATTCGTCTAAGGGAGATTTTAAAGATTTATATATTAGGTTTCCAATAAAATATTTTAAAAGAAGACCT
CGTTATCTAAAACCAAAAGATAAAATTAGACAGAAATAA

Upstream 100 bases:

>100_bases
CTTCAAGAAGGTGTAAAAGAATAGGAATTATAATGATTCTTTTGAGTATAGTTTTATACGCAGGAAATAAAATATTTTAT
AAATATTAAATAAAGGAGGT

Downstream 100 bases:

>100_bases
GTGTTTCTAAAGGGGTGATAGAATTGAAAGATAAAAATATAATATCTTCCTATGGATTGTTCGTAACTTTGGTAGTAACA
ATAATAGGTGTAAATGTATT

Product: spore germination protein B1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MVMGINIKDEISKDLEENLKYLKEIFKDNSDMIFREFYMGEVKSLIVYIDGMADKNLLNDFVLENLMDRDRSLKEEDFNK
ETLKNKFLTVSDLNEIDSLKKGIDSMLSGDTLMLVNGLDIAYVLSTRFWPTRGVTEPSGETVLRGSRDGFTETIRFNTAL
VRRRIKDTGFKIVPKQLGTRSKTDIAVMYIDDIANEDIVDEVFKRLDKIDIDAVLDSGYVEQLIEDNEWSIFPQTQSTER
PDVVAASLYEGRVSILVDNSPFAIVVPATLPALFQSPDDYYQRWIYGSILRLIRMVSIFLSVLLPSLYVATTSFHPSIIP
TRLAYFIASSREGVPFPAFIEAIIMEISLALLMESVVRLPKAIGSTIGIVGGLIIGQAAVSAGIVSPIMIIIVSLTAITS
FTTPNYEINSAFRIVRFALIILASIMGLYGIMIGLIILLVHMIKLKSFGLGYLLPIVNSSKGDFKDLYIRFPIKYFKRRP
RYLKPKDKIRQK

Sequences:

>Translated_492_residues
MVMGINIKDEISKDLEENLKYLKEIFKDNSDMIFREFYMGEVKSLIVYIDGMADKNLLNDFVLENLMDRDRSLKEEDFNK
ETLKNKFLTVSDLNEIDSLKKGIDSMLSGDTLMLVNGLDIAYVLSTRFWPTRGVTEPSGETVLRGSRDGFTETIRFNTAL
VRRRIKDTGFKIVPKQLGTRSKTDIAVMYIDDIANEDIVDEVFKRLDKIDIDAVLDSGYVEQLIEDNEWSIFPQTQSTER
PDVVAASLYEGRVSILVDNSPFAIVVPATLPALFQSPDDYYQRWIYGSILRLIRMVSIFLSVLLPSLYVATTSFHPSIIP
TRLAYFIASSREGVPFPAFIEAIIMEISLALLMESVVRLPKAIGSTIGIVGGLIIGQAAVSAGIVSPIMIIIVSLTAITS
FTTPNYEINSAFRIVRFALIILASIMGLYGIMIGLIILLVHMIKLKSFGLGYLLPIVNSSKGDFKDLYIRFPIKYFKRRP
RYLKPKDKIRQK
>Mature_492_residues
MVMGINIKDEISKDLEENLKYLKEIFKDNSDMIFREFYMGEVKSLIVYIDGMADKNLLNDFVLENLMDRDRSLKEEDFNK
ETLKNKFLTVSDLNEIDSLKKGIDSMLSGDTLMLVNGLDIAYVLSTRFWPTRGVTEPSGETVLRGSRDGFTETIRFNTAL
VRRRIKDTGFKIVPKQLGTRSKTDIAVMYIDDIANEDIVDEVFKRLDKIDIDAVLDSGYVEQLIEDNEWSIFPQTQSTER
PDVVAASLYEGRVSILVDNSPFAIVVPATLPALFQSPDDYYQRWIYGSILRLIRMVSIFLSVLLPSLYVATTSFHPSIIP
TRLAYFIASSREGVPFPAFIEAIIMEISLALLMESVVRLPKAIGSTIGIVGGLIIGQAAVSAGIVSPIMIIIVSLTAITS
FTTPNYEINSAFRIVRFALIILASIMGLYGIMIGLIILLVHMIKLKSFGLGYLLPIVNSSKGDFKDLYIRFPIKYFKRRP
RYLKPKDKIRQK

Specific function: Involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AGFK). Cannot stimulate germination in the absence of gerD and gerK gene products (fructose and glucose receptors respectively) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 55548; Mature: 55548

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMGINIKDEISKDLEENLKYLKEIFKDNSDMIFREFYMGEVKSLIVYIDGMADKNLLND
CEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHH
FVLENLMDRDRSLKEEDFNKETLKNKFLTVSDLNEIDSLKKGIDSMLSGDTLMLVNGLDI
HHHHHHHHHHCCCCHHCCCHHHHHHCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCE
AYVLSTRFWPTRGVTEPSGETVLRGSRDGFTETIRFNTALVRRRIKDTGFKIVPKQLGTR
EHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECHHCCCC
SKTDIAVMYIDDIANEDIVDEVFKRLDKIDIDAVLDSGYVEQLIEDNEWSIFPQTQSTER
CCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCCCEECCCCCCCCC
PDVVAASLYEGRVSILVDNSPFAIVVPATLPALFQSPDDYYQRWIYGSILRLIRMVSIFL
CCHHHHHHHCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
SVLLPSLYVATTSFHPSIIPTRLAYFIASSREGVPFPAFIEAIIMEISLALLMESVVRLP
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KAIGSTIGIVGGLIIGQAAVSAGIVSPIMIIIVSLTAITSFTTPNYEINSAFRIVRFALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ILASIMGLYGIMIGLIILLVHMIKLKSFGLGYLLPIVNSSKGDFKDLYIRFPIKYFKRRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHCCCCCCCHHHHEEEECHHHHHCCC
RYLKPKDKIRQK
CCCCCHHHHCCC
>Mature Secondary Structure
MVMGINIKDEISKDLEENLKYLKEIFKDNSDMIFREFYMGEVKSLIVYIDGMADKNLLND
CEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHH
FVLENLMDRDRSLKEEDFNKETLKNKFLTVSDLNEIDSLKKGIDSMLSGDTLMLVNGLDI
HHHHHHHHHHCCCCHHCCCHHHHHHCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCE
AYVLSTRFWPTRGVTEPSGETVLRGSRDGFTETIRFNTALVRRRIKDTGFKIVPKQLGTR
EHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECHHCCCC
SKTDIAVMYIDDIANEDIVDEVFKRLDKIDIDAVLDSGYVEQLIEDNEWSIFPQTQSTER
CCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCCCEECCCCCCCCC
PDVVAASLYEGRVSILVDNSPFAIVVPATLPALFQSPDDYYQRWIYGSILRLIRMVSIFL
CCHHHHHHHCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
SVLLPSLYVATTSFHPSIIPTRLAYFIASSREGVPFPAFIEAIIMEISLALLMESVVRLP
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KAIGSTIGIVGGLIIGQAAVSAGIVSPIMIIIVSLTAITSFTTPNYEINSAFRIVRFALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ILASIMGLYGIMIGLIILLVHMIKLKSFGLGYLLPIVNSSKGDFKDLYIRFPIKYFKRRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHCCCCCCCHHHHEEEECHHHHHCCC
RYLKPKDKIRQK
CCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8012571; 9384377 [H]