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The map label for this gene is yfjF [C]

Identifier: 28199260

GI number: 28199260

Start: 1599421

End: 1599663

Strand: Reverse

Name: yfjF [C]

Synonym: PD1376

Alternate gene names: 28199260

Gene position: 1599663-1599421 (Counterclockwise)

Preceding gene: 28199261

Following gene: 28199258

Centisome position: 63.48

GC content: 51.85

Gene sequence:

>243_bases
GTGCTAATTGCTTGGCCAGATCGCGTTCATTGCTGCGAGATCATGTTGCAAGAAGGAGCAAGGGTGGTCGATGCGGTGGA
GATGGCTGCGTTAAATGGGATCGAACAGGCAGTAGGTTATGCAGTGTTCGGAGTTTTGGTTACATCAGACCATGTGTTGA
ACGATGGCGATAGGGTTGAATTGTTGCGTCCTTTGTTGATTGATCCTAAGGAGGCGCGGCGCCGACGTGCTGTGTCGGCG
TAA

Upstream 100 bases:

>100_bases
TTGAATCCGGCGTTGACACTTGGATTCAATGGCTTAGCTGATCGCATGGTCAAGGACTTCATTCGCATTGCTGATTGTGG
TGGCAGTGGTGAGAGTTGAA

Downstream 100 bases:

>100_bases
ATACGTCTATCGTTTCGATAGAATCTGTTCAGCGATTACCGTGTTCTTTTCTGGAGAGGTTTGGACCGAATTGCTTGCGT
GCCGATTCCGCCAGTTTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MLIAWPDRVHCCEIMLQEGARVVDAVEMAALNGIEQAVGYAVFGVLVTSDHVLNDGDRVELLRPLLIDPKEARRRRAVSA

Sequences:

>Translated_80_residues
MLIAWPDRVHCCEIMLQEGARVVDAVEMAALNGIEQAVGYAVFGVLVTSDHVLNDGDRVELLRPLLIDPKEARRRRAVSA
>Mature_80_residues
MLIAWPDRVHCCEIMLQEGARVVDAVEMAALNGIEQAVGYAVFGVLVTSDHVLNDGDRVELLRPLLIDPKEARRRRAVSA

Specific function: Unknown

COG id: COG2914

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0125 (rnfH) family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1376_XYLFT (Q87BS2)

Other databases:

- EMBL:   AE009442
- RefSeq:   NP_779574.1
- ProteinModelPortal:   Q87BS2
- SMR:   Q87BS2
- STRING:   Q87BS2
- GeneID:   1144098
- GenomeReviews:   AE009442_GR
- KEGG:   xft:PD1376
- eggNOG:   COG2914
- HOGENOM:   HBG700644
- OMA:   MIEVEVV
- ProtClustDB:   PRK01777
- BioCyc:   XFAS183190:PD_1376-MONOMER
- HAMAP:   MF_00460
- InterPro:   IPR005346

Pfam domain/function: PF03658 UPF0125

EC number: NA

Molecular weight: Translated: 8840; Mature: 8840

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIAWPDRVHCCEIMLQEGARVVDAVEMAALNGIEQAVGYAVFGVLVTSDHVLNDGDRVE
CEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LLRPLLIDPKEARRRRAVSA
HHHHHCCCCHHHHHHHCCCC
>Mature Secondary Structure
MLIAWPDRVHCCEIMLQEGARVVDAVEMAALNGIEQAVGYAVFGVLVTSDHVLNDGDRVE
CEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LLRPLLIDPKEARRRRAVSA
HHHHHCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12533478