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The map label for this gene is glgB

Identifier: 62184903

GI number: 62184903

Start: 287191

End: 289356

Strand: Direct

Name: glgB

Synonym: CAB262

Alternate gene names: 62184903

Gene position: 287191-289356 (Clockwise)

Preceding gene: 62184902

Following gene: 62184904

Centisome position: 25.1

GC content: 44.74

Gene sequence:

>2166_bases
ATGGTCGAGAGGATTGTAAACTCTGAAGACGTCTCCTTATTAGTTTCTGGAAGGCAGAGCAATCCTCATAAGTTTTTAGG
GATTGTTTCTGAAAACTCCTCACAAGATAGAATCATTCTTTTTCGTCCTGGGGCCCATTCTGTAGTTGTAGAACTTCAGG
GAAATATAGCGCACGCACAACACCATCATTCGGGAATATTTTCTCTCACTGCTCCTAAGGGGACTCTCCCTCAGGATTAC
CGTATCTATCATCAAAATGGCCTATTAGCTCACGATCCTTATGCGTTTCCTCCTTTGTGGGGAGAAGTCGATTCTTTTTT
ATTTCATCAAGGTACGCATTATAAGATTTATGAATGTATGGGAGCGATTCCCTATAATGTTCAGGGAATTTCCGGGGTGC
TTTTTGTTGTTTGGGCTCCGCATGCACAACGTGTATCTGTTGTCGGCGATTTCAATTTTTGGAATGGTCTTGTGAATCCT
TTACGCAAAGTCTCCGATTTAGGAGTTTGGGAGTTATTTATCCCCGGTCTTGAAGAAGGAACTCTGTATAAATGGGAAAT
TGTTAGCGCTTCTGGAGAGGTACTGATCAAAACTGACCCTTATGGGAAACGTTTTGATGTTCCTCCTCATGCGCCATCTC
GCGTTGTGGATAGTGATCGCTATACATGGCATGACGCCGCGTGGATGGAAAAGCGTAAACACAGAGGCGATCAGCCCTTG
GCCATTTATGAGGTGCATGTAGGTTCGTGGCAGTGGCATGAGGGTAAACCCTTAGGATATCGGGAGTTGGCAAAGAAACT
CGCTGCCTATTGCAAAGAGATGCATTATACGCATGTGGAGCTGTTGCCAGTTACAGAACATCCTTTAAATGAATCTTGGG
GATATCAAGTCACAGGATACTACGCACCTACGTGTCGGTATGGAACACCCGAAGATTTCCAGTTTTTTGTGGACCACCTC
CATAGGGAAAATATCGGGGTGATTTTAGATTGGGTGCCCGGACACTTCCCTACGGATGGCTTTGCTTTAGCTCATTTCGA
CGGAGAAGCTCTGTATGAATCTATAGAAAATCACGAGCCATTACACCCCCATTGGCGTACGTATACTTTTGATTATCGCT
GCAATGAAGTCGTGAATTTCCTTTTAGGCAGCGCTCTATTTTGGTTAGATAAAATGCACATAGATGGTTTACGCGTCGAT
GCCGTAACCTCAATGTTGTATTTAGATTATGGCCGTCAAGAAGGAGAGTGGTCTCCCAATATCTATGGAGGTAGAGAGAA
TCTCCAGGCTATCGAGTTCATCAAACACTTGAATTCTGTCGTGCATAGAGAATTCCCCGGGGTTTTGACATTTGCTGAGG
AATCTACAGATTTCCCGAAGGTGACCCAGGCGGTCGCCCAAGGAGGGTTAGGGTTCGATTATAAATGGAACTTAGGGTGG
ATGCACGATACCTTTCGTTATATTCAGGTCGATCCTCTATTTCGTTCGTATCACCATAAGGATCTGACCTTTAGCCTTTG
GTACGCCTTTAACGAAAGGTACCTCCTGCCTCTTTCTCATGATGAGGTTGTCCATGGTAAAGGTAGCCTTTTACAAAAAA
TGCCCGGCGATACCTGGACAAAGTTTGCTCATATGCGTTTGCTGCTTAGCTATCACATATGCCAACCAGGGAAGAAACTT
CTTTTTATGGGCGGGGAATTTGCTCAGGGAAAAGAATGGACCCCGGACAGCCCTTTAGATTGGCATCTGTTAGATCACCC
CGATCACGCGTATTTACACAAGTGCGTAGCACGGATGAACGCGTTATATTGCGACCTGCCGTATTTTTGGAAAGGAGACG
GTAAGCAAGGGTCGTTCCGTTGGGTAGATTTTAAAGATACTGAAAATCATGTGATCGCTTACTACAGATTTTCAGGAGAA
GATCGAAGTAGCGCTTTACTGTGTGTCCACCACTTTAGTTCGGGATATTTTCCTTCTTATGTTCTATATTGTCAGGACAT
TCACTCCTGCCAACTCCTATTTAATAGCGATGATTGTTGCTTTGGGGGTTCAGGGAAAGGCAACCGTCAGCCAGTTCTTT
GTCTAGATCAGCACGTCTCCTGGGGGATAGATATCGAGCTCCCTCCTCTGGCCACGTTGATTTTCCATGTTGATTTTGTA
AATTAA

Upstream 100 bases:

>100_bases
GTTGGTGGGGTCGTCTACAGTTTCTTTAGGAGAAAGTATGGAGATAAAAAACCAAACTACGTATTTATGGGATTGTTTCC
GTAAATAAGATAGTTTTTCC

Downstream 100 bases:

>100_bases
CAATCTTCTATTTAATTACGTTTTAAATAATTTTGTTTATTTTTGTTGTGGTTTATTTGTGAAATTGACCAGTGTTTGAT
ATCTAGATTTGTGATTATAA

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE

Number of amino acids: Translated: 721; Mature: 721

Protein sequence:

>721_residues
MVERIVNSEDVSLLVSGRQSNPHKFLGIVSENSSQDRIILFRPGAHSVVVELQGNIAHAQHHHSGIFSLTAPKGTLPQDY
RIYHQNGLLAHDPYAFPPLWGEVDSFLFHQGTHYKIYECMGAIPYNVQGISGVLFVVWAPHAQRVSVVGDFNFWNGLVNP
LRKVSDLGVWELFIPGLEEGTLYKWEIVSASGEVLIKTDPYGKRFDVPPHAPSRVVDSDRYTWHDAAWMEKRKHRGDQPL
AIYEVHVGSWQWHEGKPLGYRELAKKLAAYCKEMHYTHVELLPVTEHPLNESWGYQVTGYYAPTCRYGTPEDFQFFVDHL
HRENIGVILDWVPGHFPTDGFALAHFDGEALYESIENHEPLHPHWRTYTFDYRCNEVVNFLLGSALFWLDKMHIDGLRVD
AVTSMLYLDYGRQEGEWSPNIYGGRENLQAIEFIKHLNSVVHREFPGVLTFAEESTDFPKVTQAVAQGGLGFDYKWNLGW
MHDTFRYIQVDPLFRSYHHKDLTFSLWYAFNERYLLPLSHDEVVHGKGSLLQKMPGDTWTKFAHMRLLLSYHICQPGKKL
LFMGGEFAQGKEWTPDSPLDWHLLDHPDHAYLHKCVARMNALYCDLPYFWKGDGKQGSFRWVDFKDTENHVIAYYRFSGE
DRSSALLCVHHFSSGYFPSYVLYCQDIHSCQLLFNSDDCCFGGSGKGNRQPVLCLDQHVSWGIDIELPPLATLIFHVDFV
N

Sequences:

>Translated_721_residues
MVERIVNSEDVSLLVSGRQSNPHKFLGIVSENSSQDRIILFRPGAHSVVVELQGNIAHAQHHHSGIFSLTAPKGTLPQDY
RIYHQNGLLAHDPYAFPPLWGEVDSFLFHQGTHYKIYECMGAIPYNVQGISGVLFVVWAPHAQRVSVVGDFNFWNGLVNP
LRKVSDLGVWELFIPGLEEGTLYKWEIVSASGEVLIKTDPYGKRFDVPPHAPSRVVDSDRYTWHDAAWMEKRKHRGDQPL
AIYEVHVGSWQWHEGKPLGYRELAKKLAAYCKEMHYTHVELLPVTEHPLNESWGYQVTGYYAPTCRYGTPEDFQFFVDHL
HRENIGVILDWVPGHFPTDGFALAHFDGEALYESIENHEPLHPHWRTYTFDYRCNEVVNFLLGSALFWLDKMHIDGLRVD
AVTSMLYLDYGRQEGEWSPNIYGGRENLQAIEFIKHLNSVVHREFPGVLTFAEESTDFPKVTQAVAQGGLGFDYKWNLGW
MHDTFRYIQVDPLFRSYHHKDLTFSLWYAFNERYLLPLSHDEVVHGKGSLLQKMPGDTWTKFAHMRLLLSYHICQPGKKL
LFMGGEFAQGKEWTPDSPLDWHLLDHPDHAYLHKCVARMNALYCDLPYFWKGDGKQGSFRWVDFKDTENHVIAYYRFSGE
DRSSALLCVHHFSSGYFPSYVLYCQDIHSCQLLFNSDDCCFGGSGKGNRQPVLCLDQHVSWGIDIELPPLATLIFHVDFV
N
>Mature_721_residues
MVERIVNSEDVSLLVSGRQSNPHKFLGIVSENSSQDRIILFRPGAHSVVVELQGNIAHAQHHHSGIFSLTAPKGTLPQDY
RIYHQNGLLAHDPYAFPPLWGEVDSFLFHQGTHYKIYECMGAIPYNVQGISGVLFVVWAPHAQRVSVVGDFNFWNGLVNP
LRKVSDLGVWELFIPGLEEGTLYKWEIVSASGEVLIKTDPYGKRFDVPPHAPSRVVDSDRYTWHDAAWMEKRKHRGDQPL
AIYEVHVGSWQWHEGKPLGYRELAKKLAAYCKEMHYTHVELLPVTEHPLNESWGYQVTGYYAPTCRYGTPEDFQFFVDHL
HRENIGVILDWVPGHFPTDGFALAHFDGEALYESIENHEPLHPHWRTYTFDYRCNEVVNFLLGSALFWLDKMHIDGLRVD
AVTSMLYLDYGRQEGEWSPNIYGGRENLQAIEFIKHLNSVVHREFPGVLTFAEESTDFPKVTQAVAQGGLGFDYKWNLGW
MHDTFRYIQVDPLFRSYHHKDLTFSLWYAFNERYLLPLSHDEVVHGKGSLLQKMPGDTWTKFAHMRLLLSYHICQPGKKL
LFMGGEFAQGKEWTPDSPLDWHLLDHPDHAYLHKCVARMNALYCDLPYFWKGDGKQGSFRWVDFKDTENHVIAYYRFSGE
DRSSALLCVHHFSSGYFPSYVLYCQDIHSCQLLFNSDDCCFGGSGKGNRQPVLCLDQHVSWGIDIELPPLATLIFHVDFV
N

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family

Homologues:

Organism=Homo sapiens, GI189458812, Length=476, Percent_Identity=31.0924369747899, Blast_Score=176, Evalue=5e-44,
Organism=Escherichia coli, GI1789839, Length=734, Percent_Identity=42.5068119891008, Blast_Score=576, Evalue=1e-165,
Organism=Caenorhabditis elegans, GI17554896, Length=383, Percent_Identity=30.2872062663185, Blast_Score=166, Evalue=3e-41,
Organism=Caenorhabditis elegans, GI32564391, Length=335, Percent_Identity=29.8507462686567, Blast_Score=141, Evalue=1e-33,
Organism=Saccharomyces cerevisiae, GI6320826, Length=629, Percent_Identity=24.9602543720191, Blast_Score=142, Evalue=2e-34,
Organism=Drosophila melanogaster, GI28573410, Length=616, Percent_Identity=27.5974025974026, Blast_Score=183, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GLGB_CHLAB (Q5L6K4)

Other databases:

- EMBL:   CR848038
- RefSeq:   YP_219688.1
- HSSP:   P07762
- ProteinModelPortal:   Q5L6K4
- SMR:   Q5L6K4
- GeneID:   3338056
- GenomeReviews:   CR848038_GR
- KEGG:   cab:CAB262
- HOGENOM:   HBG287139
- OMA:   EWIARRE
- PhylomeDB:   Q5L6K4
- ProtClustDB:   PRK05402
- BioCyc:   CABO218497:CAB262-MONOMER
- BRENDA:   2.4.1.18
- HAMAP:   MF_00685
- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756
- Gene3D:   G3DSA:2.60.40.1180
- Gene3D:   G3DSA:3.20.20.80
- Gene3D:   G3DSA:2.60.40.10
- TIGRFAMs:   TIGR01515

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48; SSF51445 Glyco_hydro_cat; SSF81296 Ig_E-set

EC number: =2.4.1.18

Molecular weight: Translated: 83024; Mature: 83024

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: ACT_SITE 295-295 ACT_SITE 330-330 ACT_SITE 335-335 ACT_SITE 398-398 ACT_SITE 400-400 ACT_SITE 453-453 ACT_SITE 520-520 ACT_SITE 521-521

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVERIVNSEDVSLLVSGRQSNPHKFLGIVSENSSQDRIILFRPGAHSVVVELQGNIAHAQ
CCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEECH
HHHSGIFSLTAPKGTLPQDYRIYHQNGLLAHDPYAFPPLWGEVDSFLFHQGTHYKIYECM
HCCCCEEEEECCCCCCCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHCCCCCEEEEHHH
GAIPYNVQGISGVLFVVWAPHAQRVSVVGDFNFWNGLVNPLRKVSDLGVWELFIPGLEEG
CCCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEECCCCCCC
TLYKWEIVSASGEVLIKTDPYGKRFDVPPHAPSRVVDSDRYTWHDAAWMEKRKHRGDQPL
CEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCE
AIYEVHVGSWQWHEGKPLGYRELAKKLAAYCKEMHYTHVELLPVTEHPLNESWGYQVTGY
EEEEEEECCEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEE
YAPTCRYGTPEDFQFFVDHLHRENIGVILDWVPGHFPTDGFALAHFDGEALYESIENHEP
ECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEECHHHHHHHHHCCCC
LHPHWRTYTFDYRCNEVVNFLLGSALFWLDKMHIDGLRVDAVTSMLYLDYGRQEGEWSPN
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHEECCCCCCCCCCC
IYGGRENLQAIEFIKHLNSVVHREFPGVLTFAEESTDFPKVTQAVAQGGLGFDYKWNLGW
CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEECCCC
MHDTFRYIQVDPLFRSYHHKDLTFSLWYAFNERYLLPLSHDEVVHGKGSLLQKMPGDTWT
CCCCEEEEEECHHHHHHCCCCCEEEEEEEECCCEEEECCCCCEECCCCHHHHHCCCCHHH
KFAHMRLLLSYHICQPGKKLLFMGGEFAQGKEWTPDSPLDWHLLDHPDHAYLHKCVARMN
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
ALYCDLPYFWKGDGKQGSFRWVDFKDTENHVIAYYRFSGEDRSSALLCVHHFSSGYFPSY
HEEECCCCEECCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCE
VLYCQDIHSCQLLFNSDDCCFGGSGKGNRQPVLCLDQHVSWGIDIELPPLATLIFHVDFV
EEEECCCCEEEEEECCCCCEECCCCCCCCCCEEEEECCCCCCEEEECCCCEEEEEEEEEC
N
C
>Mature Secondary Structure
MVERIVNSEDVSLLVSGRQSNPHKFLGIVSENSSQDRIILFRPGAHSVVVELQGNIAHAQ
CCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEECH
HHHSGIFSLTAPKGTLPQDYRIYHQNGLLAHDPYAFPPLWGEVDSFLFHQGTHYKIYECM
HCCCCEEEEECCCCCCCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHCCCCCEEEEHHH
GAIPYNVQGISGVLFVVWAPHAQRVSVVGDFNFWNGLVNPLRKVSDLGVWELFIPGLEEG
CCCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEECCCCCCC
TLYKWEIVSASGEVLIKTDPYGKRFDVPPHAPSRVVDSDRYTWHDAAWMEKRKHRGDQPL
CEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCE
AIYEVHVGSWQWHEGKPLGYRELAKKLAAYCKEMHYTHVELLPVTEHPLNESWGYQVTGY
EEEEEEECCEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEE
YAPTCRYGTPEDFQFFVDHLHRENIGVILDWVPGHFPTDGFALAHFDGEALYESIENHEP
ECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEECHHHHHHHHHCCCC
LHPHWRTYTFDYRCNEVVNFLLGSALFWLDKMHIDGLRVDAVTSMLYLDYGRQEGEWSPN
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHEECCCCCCCCCCC
IYGGRENLQAIEFIKHLNSVVHREFPGVLTFAEESTDFPKVTQAVAQGGLGFDYKWNLGW
CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEECCCC
MHDTFRYIQVDPLFRSYHHKDLTFSLWYAFNERYLLPLSHDEVVHGKGSLLQKMPGDTWT
CCCCEEEEEECHHHHHHCCCCCEEEEEEEECCCEEEECCCCCEECCCCHHHHHCCCCHHH
KFAHMRLLLSYHICQPGKKLLFMGGEFAQGKEWTPDSPLDWHLLDHPDHAYLHKCVARMN
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
ALYCDLPYFWKGDGKQGSFRWVDFKDTENHVIAYYRFSGEDRSSALLCVHHFSSGYFPSY
HEEECCCCEECCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCE
VLYCQDIHSCQLLFNSDDCCFGGSGKGNRQPVLCLDQHVSWGIDIELPPLATLIFHVDFV
EEEECCCCEEEEEECCCCCEECCCCCCCCCCEEEEECCCCCCEEEECCCCEEEEEEEEEC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA