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The map label for this gene is sufD [H]

Identifier: 62184700

GI number: 62184700

Start: 66792

End: 68018

Strand: Direct

Name: sufD [H]

Synonym: CAB053

Alternate gene names: 62184700

Gene position: 66792-68018 (Clockwise)

Preceding gene: 62184699

Following gene: 62184701

Centisome position: 5.84

GC content: 39.93

Gene sequence:

>1227_bases
TTGGAGCATACCTTTCCTATAGTTAAGGATTCTCCTATTCATCAAGCGGCACAAGCATACTATGAGAAATACTCTCAGTT
AGAGTCTTTCAAAGCCATTTTTCGTAGTTACCCATGGTTTAAGAATTTGGCGCAGTCTCCTGAGGACTACCATATTGCCA
ATGGAGGGTCGGAAACAGCAAAACAACACTGGTTACATCATGAGAACTCTTTGTCTTGTGAATGCATTTTAATTAACGGC
AAATATGAGTCATCACTTTCTCAACTGCCTGAGGGAGTCTTATCGATGACATTAAAAGAAGCCCGGTCTATTTTTTCTAC
ATTTATCAAAAAATACACCCTGGATACGCATCCTCTAGCATTTCTTAATTCTGTATGTGTTCAAGAAGAAGGCGTGGTTA
TTTATATTCCCGAAGAATTTCAGGTGAGTGAGCCTATATGTATACGTCATATATGTTCTCCGACTTCTAGAAGTGATAAG
GTCATCTACTCTCCAAGGATTATTGTGATTGTAGGGAAGCATTCTAGCTGTCGTGTATTTGTATCTCATCATACTGAGAG
AGAAAGCGGTGTTGCTGAAAGTTTTGCTATTGTAAATGGTTTGACCGAAGTATTTGTATCTGAAGGTGCAGAACTCTCTT
TGACGATGCAGCCTAAGTACATTAGTGAAGAGAGGATAAGTTGGGCGCATATGGCGACTATCGAGGCGCAAGGAGCTTGT
TCTATACATCAACATCTGCAAGAACATGTCAGTGGTTGCGGATGGTTTGACAATACCTTTTCCATGATAGGAGATGGTGC
TCATGGGGAATCTTTAGTTTCTACCCTATCTCCAAAAAAGACTTGGGTAAGAAATCTGATGTATCATGACGCTGAGAGGA
CAACATCAAGACAGAATATCAAATCGATATTGTCTTCAGGTCATTTTCTTTTTGAAGGAGGTATCCACATCACCACCCAG
GGAATGTTTTCCGATGCTTATCAAAAACATGACACTCTATTGCTTAGTGATGATGCTTGTGTAACCACCTTTCCAAGATT
AGAAATCCTTACTGATGATGTTAAAGCTTCTCACGGAGCTGCTGTAGGACCATTAGATCCTCAACAGATATTTTATATGC
AATCGCGAGGAATGACGCGAGAGGAAGCACAAAAAAAGCTAGTTCAAGGATTTTTATCTATAGAACCTAGTCAAGAAGCT
TTCCCTAAACTGTCCGAGCAAATGTAA

Upstream 100 bases:

>100_bases
TAGCCTGTTCGGGAGGGGTTTCGTTAATGCAGGAGTTAGAAGAAAAGAGTTATCACGAAGTCTTGGCACGCTCTTCTTGG
GGGTAAATATGTTAGGTTTT

Downstream 100 bases:

>100_bases
TCTCAAGATATGACTAAGGAGTATTCTATAGATGGTGTGTAGGATCAAAGAAGACTTTCCTATTTTTTCTAATAAAAAGC
TTCAGGGGGAGTCCTACATT

Product: putative ABC transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MEHTFPIVKDSPIHQAAQAYYEKYSQLESFKAIFRSYPWFKNLAQSPEDYHIANGGSETAKQHWLHHENSLSCECILING
KYESSLSQLPEGVLSMTLKEARSIFSTFIKKYTLDTHPLAFLNSVCVQEEGVVIYIPEEFQVSEPICIRHICSPTSRSDK
VIYSPRIIVIVGKHSSCRVFVSHHTERESGVAESFAIVNGLTEVFVSEGAELSLTMQPKYISEERISWAHMATIEAQGAC
SIHQHLQEHVSGCGWFDNTFSMIGDGAHGESLVSTLSPKKTWVRNLMYHDAERTTSRQNIKSILSSGHFLFEGGIHITTQ
GMFSDAYQKHDTLLLSDDACVTTFPRLEILTDDVKASHGAAVGPLDPQQIFYMQSRGMTREEAQKKLVQGFLSIEPSQEA
FPKLSEQM

Sequences:

>Translated_408_residues
MEHTFPIVKDSPIHQAAQAYYEKYSQLESFKAIFRSYPWFKNLAQSPEDYHIANGGSETAKQHWLHHENSLSCECILING
KYESSLSQLPEGVLSMTLKEARSIFSTFIKKYTLDTHPLAFLNSVCVQEEGVVIYIPEEFQVSEPICIRHICSPTSRSDK
VIYSPRIIVIVGKHSSCRVFVSHHTERESGVAESFAIVNGLTEVFVSEGAELSLTMQPKYISEERISWAHMATIEAQGAC
SIHQHLQEHVSGCGWFDNTFSMIGDGAHGESLVSTLSPKKTWVRNLMYHDAERTTSRQNIKSILSSGHFLFEGGIHITTQ
GMFSDAYQKHDTLLLSDDACVTTFPRLEILTDDVKASHGAAVGPLDPQQIFYMQSRGMTREEAQKKLVQGFLSIEPSQEA
FPKLSEQM
>Mature_408_residues
MEHTFPIVKDSPIHQAAQAYYEKYSQLESFKAIFRSYPWFKNLAQSPEDYHIANGGSETAKQHWLHHENSLSCECILING
KYESSLSQLPEGVLSMTLKEARSIFSTFIKKYTLDTHPLAFLNSVCVQEEGVVIYIPEEFQVSEPICIRHICSPTSRSDK
VIYSPRIIVIVGKHSSCRVFVSHHTERESGVAESFAIVNGLTEVFVSEGAELSLTMQPKYISEERISWAHMATIEAQGAC
SIHQHLQEHVSGCGWFDNTFSMIGDGAHGESLVSTLSPKKTWVRNLMYHDAERTTSRQNIKSILSSGHFLFEGGIHITTQ
GMFSDAYQKHDTLLLSDDACVTTFPRLEILTDDVKASHGAAVGPLDPQQIFYMQSRGMTREEAQKKLVQGFLSIEPSQEA
FPKLSEQM

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=113, Percent_Identity=38.9380530973451, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 45872; Mature: 45872

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHTFPIVKDSPIHQAAQAYYEKYSQLESFKAIFRSYPWFKNLAQSPEDYHIANGGSETA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEECCCCCHHH
KQHWLHHENSLSCECILINGKYESSLSQLPEGVLSMTLKEARSIFSTFIKKYTLDTHPLA
HHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
FLNSVCVQEEGVVIYIPEEFQVSEPICIRHICSPTSRSDKVIYSPRIIVIVGKHSSCRVF
HHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCEEEECCEEEEEEECCCCEEEE
VSHHTERESGVAESFAIVNGLTEVFVSEGAELSLTMQPKYISEERISWAHMATIEAQGAC
EEECCCHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCHHHEEEEECCCCH
SIHQHLQEHVSGCGWFDNTFSMIGDGAHGESLVSTLSPKKTWVRNLMYHDAERTTSRQNI
HHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
KSILSSGHFLFEGGIHITTQGMFSDAYQKHDTLLLSDDACVTTFPRLEILTDDVKASHGA
HHHHHCCCEEEECCEEEEECCHHHHHHHHCCEEEEECCCCEECCCCHHEEHHHHHCCCCC
AVGPLDPQQIFYMQSRGMTREEAQKKLVQGFLSIEPSQEAFPKLSEQM
CCCCCCHHHHHEEHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MEHTFPIVKDSPIHQAAQAYYEKYSQLESFKAIFRSYPWFKNLAQSPEDYHIANGGSETA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEECCCCCHHH
KQHWLHHENSLSCECILINGKYESSLSQLPEGVLSMTLKEARSIFSTFIKKYTLDTHPLA
HHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
FLNSVCVQEEGVVIYIPEEFQVSEPICIRHICSPTSRSDKVIYSPRIIVIVGKHSSCRVF
HHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCEEEECCEEEEEEECCCCEEEE
VSHHTERESGVAESFAIVNGLTEVFVSEGAELSLTMQPKYISEERISWAHMATIEAQGAC
EEECCCHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCHHHEEEEECCCCH
SIHQHLQEHVSGCGWFDNTFSMIGDGAHGESLVSTLSPKKTWVRNLMYHDAERTTSRQNI
HHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
KSILSSGHFLFEGGIHITTQGMFSDAYQKHDTLLLSDDACVTTFPRLEILTDDVKASHGA
HHHHHCCCEEEECCEEEEECCHHHHHHHHCCEEEEECCCCEECCCCHHEEHHHHHCCCCC
AVGPLDPQQIFYMQSRGMTREEAQKKLVQGFLSIEPSQEAFPKLSEQM
CCCCCCHHHHHEEHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]