| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572858
Identifier: 28572858
GI number: 28572858
Start: 811484
End: 811840
Strand: Reverse
Name: 28572858
Synonym: TW717
Alternate gene names: NA
Gene position: 811840-811484 (Counterclockwise)
Preceding gene: 28572859
Following gene: 28572857
Centisome position: 87.68
GC content: 44.82
Gene sequence:
>357_bases GTGTTGAAAATATCTCGTGAAGTGACCGTTCGCAGCCGGATATTCTCTGAGCGTGGCAGTATTACTGCAGAAGTAGCGAT ATCGTTTCCGATAGTGTTACTTGTTTCTGCGTTTTTGTACTCTGGAATTCAGCTTAGTGGAAAACAGCTGCGTCTTCAGG AAGCATCAGCAGTTGCTGCAAGGCAGCTCTCTCGAGGTGAAGCTGTAGATGTAAGAAGAGTTGCCGGTGATGTAAAGAAT ATTGTGAGTTATCACAACGGCGCCTATGTCTGTGTGCAATTAAAAGACAGCGCAAAAGGTTTACTAAATGGCATAGAGGT TAAAGCAAGCAGCTGCACCCTTGACAAAGGTCATTGA
Upstream 100 bases:
>100_bases GTCGGTTTTGCAGGGCTACTAGTTGTCGTCTTGCGAAGCGGGGAAGTGCATAAGCAGCTGAGAGATATAATTCGTGGAGC GCTGTCCTGGAGAGGCTAGT
Downstream 100 bases:
>100_bases ACGGGGTGGATGTTTTGCACGTTGCGCGAGTTGTAAAAATCCCCCTTTTAAAGAGGGAAATATTTCCCTCTTTAAAAGGG GAAGGTGGCTCTGGGTCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 118; Mature: 118
Protein sequence:
>118_residues MLKISREVTVRSRIFSERGSITAEVAISFPIVLLVSAFLYSGIQLSGKQLRLQEASAVAARQLSRGEAVDVRRVAGDVKN IVSYHNGAYVCVQLKDSAKGLLNGIEVKASSCTLDKGH
Sequences:
>Translated_118_residues MLKISREVTVRSRIFSERGSITAEVAISFPIVLLVSAFLYSGIQLSGKQLRLQEASAVAARQLSRGEAVDVRRVAGDVKN IVSYHNGAYVCVQLKDSAKGLLNGIEVKASSCTLDKGH >Mature_118_residues MLKISREVTVRSRIFSERGSITAEVAISFPIVLLVSAFLYSGIQLSGKQLRLQEASAVAARQLSRGEAVDVRRVAGDVKN IVSYHNGAYVCVQLKDSAKGLLNGIEVKASSCTLDKGH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12719; Mature: 12719
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKISREVTVRSRIFSERGSITAEVAISFPIVLLVSAFLYSGIQLSGKQLRLQEASAVAA CCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHH RQLSRGEAVDVRRVAGDVKNIVSYHNGAYVCVQLKDSAKGLLNGIEVKASSCTLDKGH HHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHCCEEEEECCCCCCCCC >Mature Secondary Structure MLKISREVTVRSRIFSERGSITAEVAISFPIVLLVSAFLYSGIQLSGKQLRLQEASAVAA CCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHH RQLSRGEAVDVRRVAGDVKNIVSYHNGAYVCVQLKDSAKGLLNGIEVKASSCTLDKGH HHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHCCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA