| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572857
Identifier: 28572857
GI number: 28572857
Start: 811077
End: 811487
Strand: Reverse
Name: 28572857
Synonym: TW716
Alternate gene names: NA
Gene position: 811487-811077 (Counterclockwise)
Preceding gene: 28572858
Following gene: 28572856
Centisome position: 87.64
GC content: 46.23
Gene sequence:
>411_bases TTGAACGGGGTGGATGTTTTGCACGTTGCGCGAGTTGTAAAAATCCCCCTTTTAAAGAGGGAAATATTTCCCTCTTTAAA AGGGGAAGGTGGCTCTGGGTCAATACTCACTATTTCCTGCGCAACTATCGTATTCATAGCCGGGATTGCTGTATTACTGC TTGGCCAAATACTGTTTACATATGGAAAAATGTCCTTAGCTGCTGACCAGGCAGCCCTGACAGCCGCAGATATACACAGA AATATTGTCGAGGGTGTTCCGTGTGATGCTGCTTCGGAGGTATCAAAACAGCATGGCGTTGCAATGATTTCGTGCAGACT AAGCGGTGAGACCGCAACGGTAGTTACATCTACAAATATTCTTGGAATTGAAATACGAGCAACCGCAAAAGCCGGCGCAC CGCCTTCTTAA
Upstream 100 bases:
>100_bases ACAACGGCGCCTATGTCTGTGTGCAATTAAAAGACAGCGCAAAAGGTTTACTAAATGGCATAGAGGTTAAAGCAAGCAGC TGCACCCTTGACAAAGGTCA
Downstream 100 bases:
>100_bases AGACTCTGAGTATCCTTGTCATTTGCGAATCTGCTTGAGAGTAATATTAGATAGGTTTTTATGAAAAAACTTGTTATAGT CGAGTCGCCAACCAAGGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 136; Mature: 136
Protein sequence:
>136_residues MNGVDVLHVARVVKIPLLKREIFPSLKGEGGSGSILTISCATIVFIAGIAVLLLGQILFTYGKMSLAADQAALTAADIHR NIVEGVPCDAASEVSKQHGVAMISCRLSGETATVVTSTNILGIEIRATAKAGAPPS
Sequences:
>Translated_136_residues MNGVDVLHVARVVKIPLLKREIFPSLKGEGGSGSILTISCATIVFIAGIAVLLLGQILFTYGKMSLAADQAALTAADIHR NIVEGVPCDAASEVSKQHGVAMISCRLSGETATVVTSTNILGIEIRATAKAGAPPS >Mature_136_residues MNGVDVLHVARVVKIPLLKREIFPSLKGEGGSGSILTISCATIVFIAGIAVLLLGQILFTYGKMSLAADQAALTAADIHR NIVEGVPCDAASEVSKQHGVAMISCRLSGETATVVTSTNILGIEIRATAKAGAPPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13968; Mature: 13968
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGVDVLHVARVVKIPLLKREIFPSLKGEGGSGSILTISCATIVFIAGIAVLLLGQILFT CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH YGKMSLAADQAALTAADIHRNIVEGVPCDAASEVSKQHGVAMISCRLSGETATVVTSTNI HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEEEEECCCEEEEEEECCE LGIEIRATAKAGAPPS EEEEEEEEECCCCCCC >Mature Secondary Structure MNGVDVLHVARVVKIPLLKREIFPSLKGEGGSGSILTISCATIVFIAGIAVLLLGQILFT CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH YGKMSLAADQAALTAADIHRNIVEGVPCDAASEVSKQHGVAMISCRLSGETATVVTSTNI HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEEEEECCCEEEEEEECCE LGIEIRATAKAGAPPS EEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA