| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572780
Identifier: 28572780
GI number: 28572780
Start: 722670
End: 723827
Strand: Reverse
Name: 28572780
Synonym: TW634
Alternate gene names: NA
Gene position: 723827-722670 (Counterclockwise)
Preceding gene: 28572782
Following gene: 28572779
Centisome position: 78.17
GC content: 56.56
Gene sequence:
>1158_bases ATGAAAAATCCTCTTGGTACCCGCGGTTCCCTTGCGGGGTTGTGTGCCACCGCCGCTATCGCGTCTGGTTTGGCTTTTAT TGTGCCTGGTGCTTTCGCAGATTCTACACCCGCCCCGGGTGCCCCTGGCCAGCCTGGCCCCGCCAGAACGGTTGATGTTG GTGGTGTTCTGGTTGTGTGCGGTCCGAATGGCCCGACTGTTTCCGGTCTTGTCGCTGCCGGCGGTTTCGGTGACGTGTGC GGTCCTGTTCCTGCACCCACTGTTGCGCCCAATCCCAGCTCTGTTCCAACGCATTCCCCGCATACCATCCCACCTCTGCC CGCTCCGGGTGATTATCAGGTTTCCCTATCGATTTCTGGCCCTAAGGGTGAGAAAGTCGACCTGAAGAATCTGAAGGTCG GTGAGAAGATTACTTTGTCTGCGACTGTGACCCGTGATACACCCACTGTGCCTACTATTCCGACAGTTTTTCCAACACCC ACAACCGGTGGCACAACCAGTGGCACAACCGGTGGTTCTTCTAGACCTACTTCCCCTTCTACCCAGGATCCCGCTCAGCC CCTTCAGCCCTTACCTCTTCCAACAACTTCTTCCGCTTCCTGCGGTCCTACTGACCTTGTTGACCCCGAGGGTAACTGCG TGCTGACCACCACTTCTCCTGCCACGTCTGCCGGTGCGGTCGGCTCGACGACTCAGTCTGCTACATCTACCCCCACGACA ACCCCGGCTAATGCTCCGTCTATCTCTACCGGGCGGCTACCGCAGGCCCTTCCTCGTGGCGGTTTCGGTGGCGCGTTTGC GCTCTCCGCGATTAAGGCTGAGCCCATTTCTGGGGGTACCGTTTCCTTCTTTATTGGCTCTGATAGTGTTGCAACTGTTT CCCTTGACGAGGGTAAGGCGTCTGCTGTCGTCACTCTCAAGAAAGAGGGGACTTTTACAGTTTCGGCTCTTTATACTGAC CCGCAGGGACTTCAGTCTAAGGCTGAGCAGTCTGTGACGGTTGTTCCAAGTACCGGTAGGCTTGCTTATACAGGTCTAGA CCTTGGTTGGGGTATATTTGGCCTGGGTACTTTGGCTGTTGCTGTTGGTGCCGGCGCTTATGTGTTTGCTCGTCGCAGGA ATAACTCTTCCTCCGATGGCGAAGGGGTTGTCCTTTAG
Upstream 100 bases:
>100_bases GGGTTACTCTTCATCTTTGAGTTTTTCAGGTTTCTGTGTTACCATTCTTGTCTGCGGTGGTTGCCGCGTAGTTTTTCCGG AGATTGGAGATATTCACGTC
Downstream 100 bases:
>100_bases GCTCCTGTATTTTTCGACCGGGCTGCGGGGTTTCTCGTAGCCCGGTTTTTGTTTGTTGCAATGTTTGTTTTTCGTGATGG ATCCTGTTTTTCTTTCGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MKNPLGTRGSLAGLCATAAIASGLAFIVPGAFADSTPAPGAPGQPGPARTVDVGGVLVVCGPNGPTVSGLVAAGGFGDVC GPVPAPTVAPNPSSVPTHSPHTIPPLPAPGDYQVSLSISGPKGEKVDLKNLKVGEKITLSATVTRDTPTVPTIPTVFPTP TTGGTTSGTTGGSSRPTSPSTQDPAQPLQPLPLPTTSSASCGPTDLVDPEGNCVLTTTSPATSAGAVGSTTQSATSTPTT TPANAPSISTGRLPQALPRGGFGGAFALSAIKAEPISGGTVSFFIGSDSVATVSLDEGKASAVVTLKKEGTFTVSALYTD PQGLQSKAEQSVTVVPSTGRLAYTGLDLGWGIFGLGTLAVAVGAGAYVFARRRNNSSSDGEGVVL
Sequences:
>Translated_385_residues MKNPLGTRGSLAGLCATAAIASGLAFIVPGAFADSTPAPGAPGQPGPARTVDVGGVLVVCGPNGPTVSGLVAAGGFGDVC GPVPAPTVAPNPSSVPTHSPHTIPPLPAPGDYQVSLSISGPKGEKVDLKNLKVGEKITLSATVTRDTPTVPTIPTVFPTP TTGGTTSGTTGGSSRPTSPSTQDPAQPLQPLPLPTTSSASCGPTDLVDPEGNCVLTTTSPATSAGAVGSTTQSATSTPTT TPANAPSISTGRLPQALPRGGFGGAFALSAIKAEPISGGTVSFFIGSDSVATVSLDEGKASAVVTLKKEGTFTVSALYTD PQGLQSKAEQSVTVVPSTGRLAYTGLDLGWGIFGLGTLAVAVGAGAYVFARRRNNSSSDGEGVVL >Mature_385_residues MKNPLGTRGSLAGLCATAAIASGLAFIVPGAFADSTPAPGAPGQPGPARTVDVGGVLVVCGPNGPTVSGLVAAGGFGDVC GPVPAPTVAPNPSSVPTHSPHTIPPLPAPGDYQVSLSISGPKGEKVDLKNLKVGEKITLSATVTRDTPTVPTIPTVFPTP TTGGTTSGTTGGSSRPTSPSTQDPAQPLQPLPLPTTSSASCGPTDLVDPEGNCVLTTTSPATSAGAVGSTTQSATSTPTT TPANAPSISTGRLPQALPRGGFGGAFALSAIKAEPISGGTVSFFIGSDSVATVSLDEGKASAVVTLKKEGTFTVSALYTD PQGLQSKAEQSVTVVPSTGRLAYTGLDLGWGIFGLGTLAVAVGAGAYVFARRRNNSSSDGEGVVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37738; Mature: 37738
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNPLGTRGSLAGLCATAAIASGLAFIVPGAFADSTPAPGAPGQPGPARTVDVGGVLVVC CCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCEEEEE GPNGPTVSGLVAAGGFGDVCGPVPAPTVAPNPSSVPTHSPHTIPPLPAPGDYQVSLSISG CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC PKGEKVDLKNLKVGEKITLSATVTRDTPTVPTIPTVFPTPTTGGTTSGTTGGSSRPTSPS CCCCEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TQDPAQPLQPLPLPTTSSASCGPTDLVDPEGNCVLTTTSPATSAGAVGSTTQSATSTPTT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC TPANAPSISTGRLPQALPRGGFGGAFALSAIKAEPISGGTVSFFIGSDSVATVSLDEGKA CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC SAVVTLKKEGTFTVSALYTDPQGLQSKAEQSVTVVPSTGRLAYTGLDLGWGIFGLGTLAV EEEEEEECCCCEEEEEEEECCHHHHHHHHCCEEEEECCCCEEEECCCCCCHHHHHHHHHH AVGAGAYVFARRRNNSSSDGEGVVL HHCCCEEEEEEECCCCCCCCCEEEC >Mature Secondary Structure MKNPLGTRGSLAGLCATAAIASGLAFIVPGAFADSTPAPGAPGQPGPARTVDVGGVLVVC CCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCEEEEE GPNGPTVSGLVAAGGFGDVCGPVPAPTVAPNPSSVPTHSPHTIPPLPAPGDYQVSLSISG CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC PKGEKVDLKNLKVGEKITLSATVTRDTPTVPTIPTVFPTPTTGGTTSGTTGGSSRPTSPS CCCCEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TQDPAQPLQPLPLPTTSSASCGPTDLVDPEGNCVLTTTSPATSAGAVGSTTQSATSTPTT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC TPANAPSISTGRLPQALPRGGFGGAFALSAIKAEPISGGTVSFFIGSDSVATVSLDEGKA CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC SAVVTLKKEGTFTVSALYTDPQGLQSKAEQSVTVVPSTGRLAYTGLDLGWGIFGLGTLAV EEEEEEECCCCEEEEEEEECCHHHHHHHHCCEEEEECCCCEEEECCCCCCHHHHHHHHHH AVGAGAYVFARRRNNSSSDGEGVVL HHCCCEEEEEEECCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA