| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572782
Identifier: 28572782
GI number: 28572782
Start: 725478
End: 725921
Strand: Reverse
Name: 28572782
Synonym: TW637
Alternate gene names: NA
Gene position: 725921-725478 (Counterclockwise)
Preceding gene: 28572784
Following gene: 28572780
Centisome position: 78.4
GC content: 53.6
Gene sequence:
>444_bases ATGCTACCGCCATCCGCGCCTGTGACTATCCATCATTCTGCACAGCCATCTGGTAAACATTCATCCTCTACCCAGGCTCC TTCTCGGGCAACCAAGCCTTCTGCTCCATCAGCCCAACCACCTGCTTCTGAAGCAACCCAACCTGCGGCACCCGCTGCTT CTCAGGTAACCCAATCAGCACAGCCTGTAGTTCCATCAGCAACCGCCAAACCTGCCGCTAAACCTTCTGCACCTACCCAG ACAACCCAGCCTGCACAGGCCATTTTGCATTGGGTTGCAAGTATCGGGATAAAGCGTTTAACTCACCTACATCTACCGCA GGCACAGCAGTTCCTGCAACCATACTGTTCTTTGGATACAGCCAACAGTAAGCCTAAGTGGGAGAATATGACATTCTCCG TACCTGCTGCAGTTCCATCGGCAACCGCCAAACCTGCCGCATGA
Upstream 100 bases:
>100_bases CTCTACATCAAACCAACCGAGTGGTAACAGAAACCCGACTTGCACGCTCCGCAAAAACACCCCAATGATTGACCGTGGAT AAAACCATTCGAATGCTACC
Downstream 100 bases:
>100_bases CCCCCAGGTAATCCTTGTGTGTGCTATGCATCTCTGTGTAAAAGTGTCTCCGCATGGTTTGGAGCACAGTATGGTTAGCA CAGTATGGTTAGCACAGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 147
Protein sequence:
>147_residues MLPPSAPVTIHHSAQPSGKHSSSTQAPSRATKPSAPSAQPPASEATQPAAPAASQVTQSAQPVVPSATAKPAAKPSAPTQ TTQPAQAILHWVASIGIKRLTHLHLPQAQQFLQPYCSLDTANSKPKWENMTFSVPAAVPSATAKPAA
Sequences:
>Translated_147_residues MLPPSAPVTIHHSAQPSGKHSSSTQAPSRATKPSAPSAQPPASEATQPAAPAASQVTQSAQPVVPSATAKPAAKPSAPTQ TTQPAQAILHWVASIGIKRLTHLHLPQAQQFLQPYCSLDTANSKPKWENMTFSVPAAVPSATAKPAA >Mature_147_residues MLPPSAPVTIHHSAQPSGKHSSSTQAPSRATKPSAPSAQPPASEATQPAAPAASQVTQSAQPVVPSATAKPAAKPSAPTQ TTQPAQAILHWVASIGIKRLTHLHLPQAQQFLQPYCSLDTANSKPKWENMTFSVPAAVPSATAKPAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15086; Mature: 15086
Theoretical pI: Translated: 10.83; Mature: 10.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPPSAPVTIHHSAQPSGKHSSSTQAPSRATKPSAPSAQPPASEATQPAAPAASQVTQSA CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC QPVVPSATAKPAAKPSAPTQTTQPAQAILHWVASIGIKRLTHLHLPQAQQFLQPYCSLDT CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC ANSKPKWENMTFSVPAAVPSATAKPAA CCCCCCCCCEEEECCCCCCCCCCCCCC >Mature Secondary Structure MLPPSAPVTIHHSAQPSGKHSSSTQAPSRATKPSAPSAQPPASEATQPAAPAASQVTQSA CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC QPVVPSATAKPAAKPSAPTQTTQPAQAILHWVASIGIKRLTHLHLPQAQQFLQPYCSLDT CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC ANSKPKWENMTFSVPAAVPSATAKPAA CCCCCCCCCEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA