| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572661
Identifier: 28572661
GI number: 28572661
Start: 551089
End: 551790
Strand: Reverse
Name: 28572661
Synonym: TW512
Alternate gene names: NA
Gene position: 551790-551089 (Counterclockwise)
Preceding gene: 28572662
Following gene: 28572657
Centisome position: 59.59
GC content: 43.16
Gene sequence:
>702_bases GTGTCTAGTTCTTATACGGAAAAGCACAGGAATCTATTATCTGATTTACAAACACTTGATACAGAGATTCAACGCTGTCA TGATGCAGAGTTATCGCGCAATAGGCGTCTTGATACACTTAGCGCAGCTTTGCGTGCCGCAAATGGGACCTTGCTTGCCT TAACTGTTGGCTCAGAGAAAGCTAATGCTCTTTATGAAAAGTATAAGAGCGATCTTGCAAGTGCAATGCAAAGAAAAACA CGTGTGAATAACCTGCTTCTTTCAGCTAAAAAACCAAAAGAATTACACAGTTTACAGAAGGAGGTGACAGGGTTAGATCG CAGATTAACCGGATATGCTGACAGGCTAAGCGCAGCAGATGAGGCAAGGTCTGCTTATATGAGTCGCTTGCAGCAAATTA ATTCCAGAATTGTTGAAATAAAGGATGAAATGCGCAGACTCAAAGACCAGAATGATCAGCGGGATGCTGCATCCGACATG TTACTAGAAAAGCGACAGGACATTGTAGGCGCTATACCGGACGAGCTTTTGCAGATGTATAACAAGCGGAAAGATGGCCT GGGGTATGCTGTTGCAACTATAGAAAACGATACATGCACGGGGTGCTGTCTTACTTTAAACTGCTCAGATATTCAAAGAT GGCAGAGTGCTGGGGGCAAGAAGCCTTTCTTTTGCCCTTACTGTGATTGTTTTCTTATTTGA
Upstream 100 bases:
>100_bases GAATGGCTCTGGCTTGGATATGCCGCGGAGTTGATAAAGAAACGTTTTCCGGATTTGTCGATTGAAGTAAGTTCTCTTAG GACTGATCCGTGGGATTTTC
Downstream 100 bases:
>100_bases TAGACTCTATCCGGAGGGCTTGCGGGCGGTCGCGGTGTCTATTGGTACCGAGGAACGTCCGGGCTCCGTAGAGCAAGGCG GTGGGTAACGCCCACCCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MSSSYTEKHRNLLSDLQTLDTEIQRCHDAELSRNRRLDTLSAALRAANGTLLALTVGSEKANALYEKYKSDLASAMQRKT RVNNLLLSAKKPKELHSLQKEVTGLDRRLTGYADRLSAADEARSAYMSRLQQINSRIVEIKDEMRRLKDQNDQRDAASDM LLEKRQDIVGAIPDELLQMYNKRKDGLGYAVATIENDTCTGCCLTLNCSDIQRWQSAGGKKPFFCPYCDCFLI
Sequences:
>Translated_233_residues MSSSYTEKHRNLLSDLQTLDTEIQRCHDAELSRNRRLDTLSAALRAANGTLLALTVGSEKANALYEKYKSDLASAMQRKT RVNNLLLSAKKPKELHSLQKEVTGLDRRLTGYADRLSAADEARSAYMSRLQQINSRIVEIKDEMRRLKDQNDQRDAASDM LLEKRQDIVGAIPDELLQMYNKRKDGLGYAVATIENDTCTGCCLTLNCSDIQRWQSAGGKKPFFCPYCDCFLI >Mature_232_residues SSSYTEKHRNLLSDLQTLDTEIQRCHDAELSRNRRLDTLSAALRAANGTLLALTVGSEKANALYEKYKSDLASAMQRKTR VNNLLLSAKKPKELHSLQKEVTGLDRRLTGYADRLSAADEARSAYMSRLQQINSRIVEIKDEMRRLKDQNDQRDAASDML LEKRQDIVGAIPDELLQMYNKRKDGLGYAVATIENDTCTGCCLTLNCSDIQRWQSAGGKKPFFCPYCDCFLI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26333; Mature: 26202
Theoretical pI: Translated: 8.38; Mature: 8.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSYTEKHRNLLSDLQTLDTEIQRCHDAELSRNRRLDTLSAALRAANGTLLALTVGSEK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCHH ANALYEKYKSDLASAMQRKTRVNNLLLSAKKPKELHSLQKEVTGLDRRLTGYADRLSAAD HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EARSAYMSRLQQINSRIVEIKDEMRRLKDQNDQRDAASDMLLEKRQDIVGAIPDELLQMY HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH NKRKDGLGYAVATIENDTCTGCCLTLNCSDIQRWQSAGGKKPFFCPYCDCFLI HCCCCCCCEEEEEECCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHCC >Mature Secondary Structure SSSYTEKHRNLLSDLQTLDTEIQRCHDAELSRNRRLDTLSAALRAANGTLLALTVGSEK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCHH ANALYEKYKSDLASAMQRKTRVNNLLLSAKKPKELHSLQKEVTGLDRRLTGYADRLSAAD HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EARSAYMSRLQQINSRIVEIKDEMRRLKDQNDQRDAASDMLLEKRQDIVGAIPDELLQMY HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH NKRKDGLGYAVATIENDTCTGCCLTLNCSDIQRWQSAGGKKPFFCPYCDCFLI HCCCCCCCEEEEEECCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA