Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is pstC [H]

Identifier: 28572568

GI number: 28572568

Start: 454102

End: 455001

Strand: Direct

Name: pstC [H]

Synonym: TW416

Alternate gene names: 28572568

Gene position: 454102-455001 (Clockwise)

Preceding gene: 28572567

Following gene: 28572569

Centisome position: 49.04

GC content: 43.44

Gene sequence:

>900_bases
GTGCGTAAGGACTTCTTCCTTTATGTATGCCTTCTGTCCGGTGTATGTATCCTTGCCATCCTTTCTTCTGTTCTTATTTT
TCTTGGCCTCCAGGCACTTCCTGTGCTCACGAATCCAGATCTCGTTTTACCCTCCGGTTCGGTTGGTATTTGGGACTATG
TAGTTCCGCTCGGCTTTGGCAGTATTTGGGTTTCATTTTTAGCTCTTTTGCTTGCTGTTCCTTTTTCCATTTATTTTGCG
CTGTTTACAACTTTTTATATTCCGCAGGGTTTATCAAAGCTTGTTGGTCGCGTAGTTGATTTTCTTGGAGCGGTACCCTC
TATTGTGTTTGGTCTATGGGGTGTAACAGTTATTGCTCCGGCTATGGTGCCGGTTTATGAGTGGCTTGGCACGCATTTTC
CATGGCTGCCATTTTTTACAGGCAATATATCCACAACGGGGAGAACAGTTTTTACAGCAGCCGTTATTTTGGCTGTTATG
GCATTACCCATAATAACTGCCTTGTGTAGGGAAATTTTTTTTCAGATTCCCAGATTCCTTATTGAGGGTGCTTTTGCGCT
TGGGGCTACAAGATTTGAGGTCATGAAGCTTGTCGTAATACCGCTTAGTAAAGCAGGTATTGTCTCTGCAGCTGTTCTTG
GGTTGGGCAGGGCAATCGGAGAAACTATAGCTGTTGCTTTGATTCTTAGCTCATCTGGTGTTATAAATTTTTCTCTTATA
GCCGCCCAAGCTCCGAGCACAATTGCTGCCAATATAGCTTTGCAATTTCCAGAGGCGCAGGGTAATCTTCTTGCCGCGCT
TATTGCCTCAGGGCTTGTTTTGTTCGTAGTTTCTTTCCTAATCAATTTGGTTGCCAGAAAAATAACGAATCGTCAGATTA
AAGTCCTAAGAGGTATATAA

Upstream 100 bases:

>100_bases
GAGAAAAACGGCGCCTAAGGGGAGGTCTGTCTTTGCTTTTCCGCCCCCATTGCGTGTTTTTGCTGATGGTGCGTTCTAAG
TTTCTGTAAGGTCTTTTTTC

Downstream 100 bases:

>100_bases
GCTGGGCATTTGATATATGAGTAAAAGATGTGCGCACTTGCTTCGTGAGATCCTTAGGGTCCAGGAATGACTAAGTTACC
TCCGCGTAAAAATATGCACA

Product: phosphate ABC transporter permease

Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MRKDFFLYVCLLSGVCILAILSSVLIFLGLQALPVLTNPDLVLPSGSVGIWDYVVPLGFGSIWVSFLALLLAVPFSIYFA
LFTTFYIPQGLSKLVGRVVDFLGAVPSIVFGLWGVTVIAPAMVPVYEWLGTHFPWLPFFTGNISTTGRTVFTAAVILAVM
ALPIITALCREIFFQIPRFLIEGAFALGATRFEVMKLVVIPLSKAGIVSAAVLGLGRAIGETIAVALILSSSGVINFSLI
AAQAPSTIAANIALQFPEAQGNLLAALIASGLVLFVVSFLINLVARKITNRQIKVLRGI

Sequences:

>Translated_299_residues
MRKDFFLYVCLLSGVCILAILSSVLIFLGLQALPVLTNPDLVLPSGSVGIWDYVVPLGFGSIWVSFLALLLAVPFSIYFA
LFTTFYIPQGLSKLVGRVVDFLGAVPSIVFGLWGVTVIAPAMVPVYEWLGTHFPWLPFFTGNISTTGRTVFTAAVILAVM
ALPIITALCREIFFQIPRFLIEGAFALGATRFEVMKLVVIPLSKAGIVSAAVLGLGRAIGETIAVALILSSSGVINFSLI
AAQAPSTIAANIALQFPEAQGNLLAALIASGLVLFVVSFLINLVARKITNRQIKVLRGI
>Mature_299_residues
MRKDFFLYVCLLSGVCILAILSSVLIFLGLQALPVLTNPDLVLPSGSVGIWDYVVPLGFGSIWVSFLALLLAVPFSIYFA
LFTTFYIPQGLSKLVGRVVDFLGAVPSIVFGLWGVTVIAPAMVPVYEWLGTHFPWLPFFTGNISTTGRTVFTAAVILAVM
ALPIITALCREIFFQIPRFLIEGAFALGATRFEVMKLVVIPLSKAGIVSAAVLGLGRAIGETIAVALILSSSGVINFSLI
AAQAPSTIAANIALQFPEAQGNLLAALIASGLVLFVVSFLINLVARKITNRQIKVLRGI

Specific function: Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0573

COG function: function code P; ABC-type phosphate transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1790164, Length=252, Percent_Identity=36.1111111111111, Blast_Score=134, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515
- InterPro:   IPR011864 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31915; Mature: 31915

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKDFFLYVCLLSGVCILAILSSVLIFLGLQALPVLTNPDLVLPSGSVGIWDYVVPLGFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHCHH
SIWVSFLALLLAVPFSIYFALFTTFYIPQGLSKLVGRVVDFLGAVPSIVFGLWGVTVIAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMVPVYEWLGTHFPWLPFFTGNISTTGRTVFTAAVILAVMALPIITALCREIFFQIPRFL
HHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEGAFALGATRFEVMKLVVIPLSKAGIVSAAVLGLGRAIGETIAVALILSSSGVINFSLI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
AAQAPSTIAANIALQFPEAQGNLLAALIASGLVLFVVSFLINLVARKITNRQIKVLRGI
ECCCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
>Mature Secondary Structure
MRKDFFLYVCLLSGVCILAILSSVLIFLGLQALPVLTNPDLVLPSGSVGIWDYVVPLGFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHCHH
SIWVSFLALLLAVPFSIYFALFTTFYIPQGLSKLVGRVVDFLGAVPSIVFGLWGVTVIAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMVPVYEWLGTHFPWLPFFTGNISTTGRTVFTAAVILAVMALPIITALCREIFFQIPRFL
HHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEGAFALGATRFEVMKLVVIPLSKAGIVSAAVLGLGRAIGETIAVALILSSSGVINFSLI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
AAQAPSTIAANIALQFPEAQGNLLAALIASGLVLFVVSFLINLVARKITNRQIKVLRGI
ECCCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; phosphate [Periplasm]; H2O [C]

Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]