| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is pstC [H]
Identifier: 28572568
GI number: 28572568
Start: 454102
End: 455001
Strand: Direct
Name: pstC [H]
Synonym: TW416
Alternate gene names: 28572568
Gene position: 454102-455001 (Clockwise)
Preceding gene: 28572567
Following gene: 28572569
Centisome position: 49.04
GC content: 43.44
Gene sequence:
>900_bases GTGCGTAAGGACTTCTTCCTTTATGTATGCCTTCTGTCCGGTGTATGTATCCTTGCCATCCTTTCTTCTGTTCTTATTTT TCTTGGCCTCCAGGCACTTCCTGTGCTCACGAATCCAGATCTCGTTTTACCCTCCGGTTCGGTTGGTATTTGGGACTATG TAGTTCCGCTCGGCTTTGGCAGTATTTGGGTTTCATTTTTAGCTCTTTTGCTTGCTGTTCCTTTTTCCATTTATTTTGCG CTGTTTACAACTTTTTATATTCCGCAGGGTTTATCAAAGCTTGTTGGTCGCGTAGTTGATTTTCTTGGAGCGGTACCCTC TATTGTGTTTGGTCTATGGGGTGTAACAGTTATTGCTCCGGCTATGGTGCCGGTTTATGAGTGGCTTGGCACGCATTTTC CATGGCTGCCATTTTTTACAGGCAATATATCCACAACGGGGAGAACAGTTTTTACAGCAGCCGTTATTTTGGCTGTTATG GCATTACCCATAATAACTGCCTTGTGTAGGGAAATTTTTTTTCAGATTCCCAGATTCCTTATTGAGGGTGCTTTTGCGCT TGGGGCTACAAGATTTGAGGTCATGAAGCTTGTCGTAATACCGCTTAGTAAAGCAGGTATTGTCTCTGCAGCTGTTCTTG GGTTGGGCAGGGCAATCGGAGAAACTATAGCTGTTGCTTTGATTCTTAGCTCATCTGGTGTTATAAATTTTTCTCTTATA GCCGCCCAAGCTCCGAGCACAATTGCTGCCAATATAGCTTTGCAATTTCCAGAGGCGCAGGGTAATCTTCTTGCCGCGCT TATTGCCTCAGGGCTTGTTTTGTTCGTAGTTTCTTTCCTAATCAATTTGGTTGCCAGAAAAATAACGAATCGTCAGATTA AAGTCCTAAGAGGTATATAA
Upstream 100 bases:
>100_bases GAGAAAAACGGCGCCTAAGGGGAGGTCTGTCTTTGCTTTTCCGCCCCCATTGCGTGTTTTTGCTGATGGTGCGTTCTAAG TTTCTGTAAGGTCTTTTTTC
Downstream 100 bases:
>100_bases GCTGGGCATTTGATATATGAGTAAAAGATGTGCGCACTTGCTTCGTGAGATCCTTAGGGTCCAGGAATGACTAAGTTACC TCCGCGTAAAAATATGCACA
Product: phosphate ABC transporter permease
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MRKDFFLYVCLLSGVCILAILSSVLIFLGLQALPVLTNPDLVLPSGSVGIWDYVVPLGFGSIWVSFLALLLAVPFSIYFA LFTTFYIPQGLSKLVGRVVDFLGAVPSIVFGLWGVTVIAPAMVPVYEWLGTHFPWLPFFTGNISTTGRTVFTAAVILAVM ALPIITALCREIFFQIPRFLIEGAFALGATRFEVMKLVVIPLSKAGIVSAAVLGLGRAIGETIAVALILSSSGVINFSLI AAQAPSTIAANIALQFPEAQGNLLAALIASGLVLFVVSFLINLVARKITNRQIKVLRGI
Sequences:
>Translated_299_residues MRKDFFLYVCLLSGVCILAILSSVLIFLGLQALPVLTNPDLVLPSGSVGIWDYVVPLGFGSIWVSFLALLLAVPFSIYFA LFTTFYIPQGLSKLVGRVVDFLGAVPSIVFGLWGVTVIAPAMVPVYEWLGTHFPWLPFFTGNISTTGRTVFTAAVILAVM ALPIITALCREIFFQIPRFLIEGAFALGATRFEVMKLVVIPLSKAGIVSAAVLGLGRAIGETIAVALILSSSGVINFSLI AAQAPSTIAANIALQFPEAQGNLLAALIASGLVLFVVSFLINLVARKITNRQIKVLRGI >Mature_299_residues MRKDFFLYVCLLSGVCILAILSSVLIFLGLQALPVLTNPDLVLPSGSVGIWDYVVPLGFGSIWVSFLALLLAVPFSIYFA LFTTFYIPQGLSKLVGRVVDFLGAVPSIVFGLWGVTVIAPAMVPVYEWLGTHFPWLPFFTGNISTTGRTVFTAAVILAVM ALPIITALCREIFFQIPRFLIEGAFALGATRFEVMKLVVIPLSKAGIVSAAVLGLGRAIGETIAVALILSSSGVINFSLI AAQAPSTIAANIALQFPEAQGNLLAALIASGLVLFVVSFLINLVARKITNRQIKVLRGI
Specific function: Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0573
COG function: function code P; ABC-type phosphate transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1790164, Length=252, Percent_Identity=36.1111111111111, Blast_Score=134, Evalue=1e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR011864 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 31915; Mature: 31915
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKDFFLYVCLLSGVCILAILSSVLIFLGLQALPVLTNPDLVLPSGSVGIWDYVVPLGFG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHCHH SIWVSFLALLLAVPFSIYFALFTTFYIPQGLSKLVGRVVDFLGAVPSIVFGLWGVTVIAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMVPVYEWLGTHFPWLPFFTGNISTTGRTVFTAAVILAVMALPIITALCREIFFQIPRFL HHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEGAFALGATRFEVMKLVVIPLSKAGIVSAAVLGLGRAIGETIAVALILSSSGVINFSLI HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE AAQAPSTIAANIALQFPEAQGNLLAALIASGLVLFVVSFLINLVARKITNRQIKVLRGI ECCCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC >Mature Secondary Structure MRKDFFLYVCLLSGVCILAILSSVLIFLGLQALPVLTNPDLVLPSGSVGIWDYVVPLGFG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHCHH SIWVSFLALLLAVPFSIYFALFTTFYIPQGLSKLVGRVVDFLGAVPSIVFGLWGVTVIAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMVPVYEWLGTHFPWLPFFTGNISTTGRTVFTAAVILAVMALPIITALCREIFFQIPRFL HHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEGAFALGATRFEVMKLVVIPLSKAGIVSAAVLGLGRAIGETIAVALILSSSGVINFSLI HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE AAQAPSTIAANIALQFPEAQGNLLAALIASGLVLFVVSFLINLVARKITNRQIKVLRGI ECCCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]