Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is pstS [H]

Identifier: 28572567

GI number: 28572567

Start: 452949

End: 454019

Strand: Direct

Name: pstS [H]

Synonym: TW415

Alternate gene names: 28572567

Gene position: 452949-454019 (Clockwise)

Preceding gene: 28572565

Following gene: 28572568

Centisome position: 48.92

GC content: 47.71

Gene sequence:

>1071_bases
GTGTGTCGCTTGGATAGAAAGCTTTTTCTCGTATTTGCTTCAGTTGTAACTCTTTTTTCTGTTTCATGTTTTGGAAACTC
CAAAACCTCTTTAGAGGGGTCGGTATCAGTAACTGGGGCTTCTAGTCAGAGCGTGGCCCAATCAGTTTGGATATCAGAAT
TTCGCAAGATCCATCCGGGTGTAACAGTCAACTATGAACCTCAGGGGTCTGGTGCGGGGCGTAGGGCATTCTTGTCTGGT
GCAGTTGATCTGGCCGCGACAGATGTTCCCTTTGCTGACCCCGAGCTCACGGGGGACTTTAAGGGTTGTACTGCGGATGG
TCCGCTTCAGCTTCCTGTCTATATCTCTCCGATCGCGATAGCTTATAACCTTCCAGGGGTCTCTGACCTAAAACTTGACG
CTTCCGTAATTGCTGGGATTTTCAGTGGGGCAATAACTACTTGGGATTCGCCTAGAATTTCCGCTCTCAACCCTGGCATA
GAGTTGCCGAGTAAAAAGATAACCGCTGTGCACCGCTCGGATAATTCGGGGACTACGGAGAATTTTTCAGATTATATCCA
TACTAATGCCCCCAGTGATTGGCCCCATAAACCATCAACTAAGTTCCCTTACACATACGGTGAGGCCGCTAAAGGTACCT
CTGGGGTAGCGCAGGTTTTGAAAGCTACAGTTGGCTCTATAGGTTATTTGGATCTCTCTTTGGCTCGTGGAATGTCTCTT
GCGACCCTGAAGGTTGGTTCGGGCTTTTCAAAACCATCGGCCGAGAGTGCTACCCTGACAGTGAGCGACTCTGAATTTCC
GAGCAAGAATCCGAATAGTTTTTCTGTAAAGATAAATCGCAGGACAGAGAAAGCTGGCGCCTGGCCTCTTATCCTTGTCA
GTTATGTCGTTGCTTGCGTTGGTTACAAAAAAGGCAACAAAGACGCTATTTTCTCGTATCTCAAGTTTATTCTTTCTGAA
AAAGCCCAGGGTCAAGCAGCACAACAGGCTGGCTCTGCTCCATTGCCGGAATCTCTTTCAAAGAAACTCCTCGAGCTTGT
CAATAAAATCGCTGAGAAAAACGGCGCCTAA

Upstream 100 bases:

>100_bases
CGAATGCTACGTGGGAGAGGAATTTACCTGCCTCTAAAAAGATTTTGTAGTGTAAATTTCGTGTGTTACACTGCGACTGT
CTTTTGTCGACTAGTGAAGG

Downstream 100 bases:

>100_bases
GGGGAGGTCTGTCTTTGCTTTTCCGCCCCCATTGCGTGTTTTTGCTGATGGTGCGTTCTAAGTTTCTGTAAGGTCTTTTT
TCGTGCGTAAGGACTTCTTC

Product: ABC transporter phosphate-binding lipoprotein

Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]

Alternate protein names: PBP 3; PstS-3 [H]

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MCRLDRKLFLVFASVVTLFSVSCFGNSKTSLEGSVSVTGASSQSVAQSVWISEFRKIHPGVTVNYEPQGSGAGRRAFLSG
AVDLAATDVPFADPELTGDFKGCTADGPLQLPVYISPIAIAYNLPGVSDLKLDASVIAGIFSGAITTWDSPRISALNPGI
ELPSKKITAVHRSDNSGTTENFSDYIHTNAPSDWPHKPSTKFPYTYGEAAKGTSGVAQVLKATVGSIGYLDLSLARGMSL
ATLKVGSGFSKPSAESATLTVSDSEFPSKNPNSFSVKINRRTEKAGAWPLILVSYVVACVGYKKGNKDAIFSYLKFILSE
KAQGQAAQQAGSAPLPESLSKKLLELVNKIAEKNGA

Sequences:

>Translated_356_residues
MCRLDRKLFLVFASVVTLFSVSCFGNSKTSLEGSVSVTGASSQSVAQSVWISEFRKIHPGVTVNYEPQGSGAGRRAFLSG
AVDLAATDVPFADPELTGDFKGCTADGPLQLPVYISPIAIAYNLPGVSDLKLDASVIAGIFSGAITTWDSPRISALNPGI
ELPSKKITAVHRSDNSGTTENFSDYIHTNAPSDWPHKPSTKFPYTYGEAAKGTSGVAQVLKATVGSIGYLDLSLARGMSL
ATLKVGSGFSKPSAESATLTVSDSEFPSKNPNSFSVKINRRTEKAGAWPLILVSYVVACVGYKKGNKDAIFSYLKFILSE
KAQGQAAQQAGSAPLPESLSKKLLELVNKIAEKNGA
>Mature_356_residues
MCRLDRKLFLVFASVVTLFSVSCFGNSKTSLEGSVSVTGASSQSVAQSVWISEFRKIHPGVTVNYEPQGSGAGRRAFLSG
AVDLAATDVPFADPELTGDFKGCTADGPLQLPVYISPIAIAYNLPGVSDLKLDASVIAGIFSGAITTWDSPRISALNPGI
ELPSKKITAVHRSDNSGTTENFSDYIHTNAPSDWPHKPSTKFPYTYGEAAKGTSGVAQVLKATVGSIGYLDLSLARGMSL
ATLKVGSGFSKPSAESATLTVSDSEFPSKNPNSFSVKINRRTEKAGAWPLILVSYVVACVGYKKGNKDAIFSYLKFILSE
KAQGQAAQQAGSAPLPESLSKKLLELVNKIAEKNGA

Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]

COG id: COG0226

COG function: function code P; ABC-type phosphate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pstS family [H]

Homologues:

Organism=Escherichia coli, GI2367271, Length=320, Percent_Identity=28.125, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005673
- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 37554; Mature: 37554

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRLDRKLFLVFASVVTLFSVSCFGNSKTSLEGSVSVTGASSQSVAQSVWISEFRKIHPG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCC
VTVNYEPQGSGAGRRAFLSGAVDLAATDVPFADPELTGDFKGCTADGPLQLPVYISPIAI
CEEEECCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCEEECCEEE
AYNLPGVSDLKLDASVIAGIFSGAITTWDSPRISALNPGIELPSKKITAVHRSDNSGTTE
EECCCCCCCCCHHHHHHHHHHHCCEECCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCC
NFSDYIHTNAPSDWPHKPSTKFPYTYGEAAKGTSGVAQVLKATVGSIGYLDLSLARGMSL
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHCCCEE
ATLKVGSGFSKPSAESATLTVSDSEFPSKNPNSFSVKINRRTEKAGAWPLILVSYVVACV
EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
GYKKGNKDAIFSYLKFILSEKAQGQAAQQAGSAPLPESLSKKLLELVNKIAEKNGA
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MCRLDRKLFLVFASVVTLFSVSCFGNSKTSLEGSVSVTGASSQSVAQSVWISEFRKIHPG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCC
VTVNYEPQGSGAGRRAFLSGAVDLAATDVPFADPELTGDFKGCTADGPLQLPVYISPIAI
CEEEECCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCEEECCEEE
AYNLPGVSDLKLDASVIAGIFSGAITTWDSPRISALNPGIELPSKKITAVHRSDNSGTTE
EECCCCCCCCCHHHHHHHHHHHCCEECCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCC
NFSDYIHTNAPSDWPHKPSTKFPYTYGEAAKGTSGVAQVLKATVGSIGYLDLSLARGMSL
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHCCCEE
ATLKVGSGFSKPSAESATLTVSDSEFPSKNPNSFSVKINRRTEKAGAWPLILVSYVVACV
EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
GYKKGNKDAIFSYLKFILSEKAQGQAAQQAGSAPLPESLSKKLLELVNKIAEKNGA
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; phosphate [Periplasm]; H2O [C]

Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA