| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572544
Identifier: 28572544
GI number: 28572544
Start: 425857
End: 427077
Strand: Reverse
Name: 28572544
Synonym: TW391
Alternate gene names: NA
Gene position: 427077-425857 (Counterclockwise)
Preceding gene: 28572566
Following gene: 28572543
Centisome position: 46.12
GC content: 41.28
Gene sequence:
>1221_bases ATGTGTACACAGAGACTCCGAGTGGCACGAGATAAGGGATTAAAGATGCTCAGTGACAAATGGGGTTTTGTAGATGATGC CCGCAATGTCTACCTAAGGAGTAACGGCGCTAATGTACTAATCGGGAACTACCCAGACGGAACACCTCAGGAAGCGCTGA TCCACTATAGGCGGAAATATGACGCGGTACGTAAACGGGTTGAGATTATTCTTACCCGCACTCTCGTGCTTTACGCGCAG CCACGGCAGATCGAAGAGCAAATATGTGGACTTGAGGAAGAAATTGCCTCTCCGAAGTTCTTAGGTGATATTACGGTTCT ACGCGACAAGCTGACACTTGCTAGAAAAAATCTTGAGGAAGCTCAACGAAATCTTGCAGAAAGGCAAAAGAAAGTCTATG AAGATAATTACGAGCTTGTTGCCAAGCTGGAAGCGCTGGTCAATGAAAAGAATAAAAACGGTGCACAAAGAAATAGAGAA GCAAAAGCGATTCTGAAGAAGTGGTATGAACTTGAGAAACCAAAACATGCGGGCAGTCTGCACAAACGCATGAAAGTTGC AAAGATGGAATTACAAAAAGACCTAGATAATTATTTCAAGGATCAACGAGCCAAGAACGATCGTGTTGTGCAGCAAAAAC GGAGCATAATTCAAAAAGCCAAGTCCATAAAAAGGACAACAGATGCATATGCCCGGTATAAAACACTTCTAAACGAGTGG AAATCCCTTCCAAAAGTACCAAGAAGTCAGGAGAATGAACTTTGGCAAAATTTCCGAACCGCAACAGCCGAACTCGTCGA CAGGCATGAAAAAAGCCTCATAGAAATACAGGAGAAACAGAACGCAGCTTTCGAAGAGAAAGTAAAACTATTGGAAAAAG GTAGAAGCATTCTGAGTATCGATGATTGCCGTAAGGCACGTAGGGAATATCTGGTGCTTGTAGACAAATGGGAAAAAATT GGTAGTGTGCCAAAAGATAAAACAAAATCTCTTGAAGATGATCTACGCAAATTGGATTTGGCAATACGGAAAAAAGAAAA TGAAGCTTGGGAAAAGAATGATACAGAAAAAAATCTACGATCAAGACTGCTTCTAGATCAGCTCGAGGCAAAGCTGCTGA GCCTGGAAAATAGCCTTAAAGTCGAAACAAACACGGTGAATTCTGAAAAAATAAAAAATGAGATCGGAAAAACTAAGAGT TTTATCGATATTATAAAATGA
Upstream 100 bases:
>100_bases CCTAGAACACGATGACAAAGTAAACCCCCGAACAAACGAAAGAAGGATAGCATGGAAGTACTTTCTGAAAAAATCTGCCA GAAAATCTGTATGGAAAAAT
Downstream 100 bases:
>100_bases ACTTTTACCTGGTTATAAGGTATTTTTCAAAAATAATTTGACTTGCCAGGGGTTCTCGTACATCATCTCTCTATGAGTGC GGAAAAGCGTAGATCTATTA
Product: hypothetical protein
Products: NA
Alternate protein names: ATPase; DNA Repair ATPase; Methyl-Accepting Chemotaxis Protein
Number of amino acids: Translated: 406; Mature: 406
Protein sequence:
>406_residues MCTQRLRVARDKGLKMLSDKWGFVDDARNVYLRSNGANVLIGNYPDGTPQEALIHYRRKYDAVRKRVEIILTRTLVLYAQ PRQIEEQICGLEEEIASPKFLGDITVLRDKLTLARKNLEEAQRNLAERQKKVYEDNYELVAKLEALVNEKNKNGAQRNRE AKAILKKWYELEKPKHAGSLHKRMKVAKMELQKDLDNYFKDQRAKNDRVVQQKRSIIQKAKSIKRTTDAYARYKTLLNEW KSLPKVPRSQENELWQNFRTATAELVDRHEKSLIEIQEKQNAAFEEKVKLLEKGRSILSIDDCRKARREYLVLVDKWEKI GSVPKDKTKSLEDDLRKLDLAIRKKENEAWEKNDTEKNLRSRLLLDQLEAKLLSLENSLKVETNTVNSEKIKNEIGKTKS FIDIIK
Sequences:
>Translated_406_residues MCTQRLRVARDKGLKMLSDKWGFVDDARNVYLRSNGANVLIGNYPDGTPQEALIHYRRKYDAVRKRVEIILTRTLVLYAQ PRQIEEQICGLEEEIASPKFLGDITVLRDKLTLARKNLEEAQRNLAERQKKVYEDNYELVAKLEALVNEKNKNGAQRNRE AKAILKKWYELEKPKHAGSLHKRMKVAKMELQKDLDNYFKDQRAKNDRVVQQKRSIIQKAKSIKRTTDAYARYKTLLNEW KSLPKVPRSQENELWQNFRTATAELVDRHEKSLIEIQEKQNAAFEEKVKLLEKGRSILSIDDCRKARREYLVLVDKWEKI GSVPKDKTKSLEDDLRKLDLAIRKKENEAWEKNDTEKNLRSRLLLDQLEAKLLSLENSLKVETNTVNSEKIKNEIGKTKS FIDIIK >Mature_406_residues MCTQRLRVARDKGLKMLSDKWGFVDDARNVYLRSNGANVLIGNYPDGTPQEALIHYRRKYDAVRKRVEIILTRTLVLYAQ PRQIEEQICGLEEEIASPKFLGDITVLRDKLTLARKNLEEAQRNLAERQKKVYEDNYELVAKLEALVNEKNKNGAQRNRE AKAILKKWYELEKPKHAGSLHKRMKVAKMELQKDLDNYFKDQRAKNDRVVQQKRSIIQKAKSIKRTTDAYARYKTLLNEW KSLPKVPRSQENELWQNFRTATAELVDRHEKSLIEIQEKQNAAFEEKVKLLEKGRSILSIDDCRKARREYLVLVDKWEKI GSVPKDKTKSLEDDLRKLDLAIRKKENEAWEKNDTEKNLRSRLLLDQLEAKLLSLENSLKVETNTVNSEKIKNEIGKTKS FIDIIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47601; Mature: 47601
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCTQRLRVARDKGLKMLSDKWGFVDDARNVYLRSNGANVLIGNYPDGTPQEALIHYRRKY CCCHHHHHHHHHCHHHHHHCCCCHHCCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHH DAVRKRVEIILTRTLVLYAQPRQIEEQICGLEEEIASPKFLGDITVLRDKLTLARKNLEE HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH AQRNLAERQKKVYEDNYELVAKLEALVNEKNKNGAQRNREAKAILKKWYELEKPKHAGSL HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH HKRMKVAKMELQKDLDNYFKDQRAKNDRVVQQKRSIIQKAKSIKRTTDAYARYKTLLNEW HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSLPKVPRSQENELWQNFRTATAELVDRHEKSLIEIQEKQNAAFEEKVKLLEKGRSILSI HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEECH DDCRKARREYLVLVDKWEKIGSVPKDKTKSLEDDLRKLDLAIRKKENEAWEKNDTEKNLR HHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHH SRLLLDQLEAKLLSLENSLKVETNTVNSEKIKNEIGKTKSFIDIIK HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MCTQRLRVARDKGLKMLSDKWGFVDDARNVYLRSNGANVLIGNYPDGTPQEALIHYRRKY CCCHHHHHHHHHCHHHHHHCCCCHHCCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHH DAVRKRVEIILTRTLVLYAQPRQIEEQICGLEEEIASPKFLGDITVLRDKLTLARKNLEE HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH AQRNLAERQKKVYEDNYELVAKLEALVNEKNKNGAQRNREAKAILKKWYELEKPKHAGSL HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH HKRMKVAKMELQKDLDNYFKDQRAKNDRVVQQKRSIIQKAKSIKRTTDAYARYKTLLNEW HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSLPKVPRSQENELWQNFRTATAELVDRHEKSLIEIQEKQNAAFEEKVKLLEKGRSILSI HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEECH DDCRKARREYLVLVDKWEKIGSVPKDKTKSLEDDLRKLDLAIRKKENEAWEKNDTEKNLR HHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHH SRLLLDQLEAKLLSLENSLKVETNTVNSEKIKNEIGKTKSFIDIIK HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA