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The map label for this gene is secB [H]

Identifier: 27364679

GI number: 27364679

Start: 1263283

End: 1263750

Strand: Reverse

Name: secB [H]

Synonym: VV1_1278

Alternate gene names: 27364679

Gene position: 1263750-1263283 (Counterclockwise)

Preceding gene: 27364680

Following gene: 27364678

Centisome position: 38.51

GC content: 46.37

Gene sequence:

>468_bases
ATGGCTGAAGCAGCACCACAAGATACCCAACAACACTTTGCTATCCAACGTATCTTCCTAAAAGATGTTTCTTTCGAAGC
GCCAAACTCACCAGTCATGTTCCAAAAAGAGTGGAACCCAGATGTGAAACTGGATCTAGATACGCAAAGCCGTGAGCTAG
GTGAAGGCGTTTACGAAGTCATTCTACGTTTGACGGTCACCGTGAAAAACGCAGAAGAAACGGCATTCCTATGTGAAGTG
CAACAAGGCGGTATCTTCACAGCAGAGAAGATGGAAGCAGGTCAATTGGCTCACTGCCTAGGTGCATTCTGTCCAAACAT
CCTATTCCCATATGCGCGTGAAACCATTTCAAGCCTAGTGGTGAAAGGTACGTTCCCTCAACTGAACCTAGCGCCAGTAA
ACTTTGATGCGCTGTTCATGAACTACCTACAACAGCAAGCTGCACAACAAGGTGCAGAACAAGCTTAA

Upstream 100 bases:

>100_bases
TTGATCTGGTCATTGATGAATGGCTCGGTTAGTCTCAGGGCAGACACATTCAAGGCTTGAAGCGACAAGTCTGATTTAAC
GAATATTGAAGGATTTAAAA

Downstream 100 bases:

>100_bases
TTCCGTATGGAATTCCCCTCTCACTGGCCACAGTGAAAGGCATTAAAAGAAATGCACATGCATCCTAAAACACGATGTTA
TGTGCATTTTTTATTGGATC

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MAEAAPQDTQQHFAIQRIFLKDVSFEAPNSPVMFQKEWNPDVKLDLDTQSRELGEGVYEVILRLTVTVKNAEETAFLCEV
QQGGIFTAEKMEAGQLAHCLGAFCPNILFPYARETISSLVVKGTFPQLNLAPVNFDALFMNYLQQQAAQQGAEQA

Sequences:

>Translated_155_residues
MAEAAPQDTQQHFAIQRIFLKDVSFEAPNSPVMFQKEWNPDVKLDLDTQSRELGEGVYEVILRLTVTVKNAEETAFLCEV
QQGGIFTAEKMEAGQLAHCLGAFCPNILFPYARETISSLVVKGTFPQLNLAPVNFDALFMNYLQQQAAQQGAEQA
>Mature_154_residues
AEAAPQDTQQHFAIQRIFLKDVSFEAPNSPVMFQKEWNPDVKLDLDTQSRELGEGVYEVILRLTVTVKNAEETAFLCEVQ
QGGIFTAEKMEAGQLAHCLGAFCPNILFPYARETISSLVVKGTFPQLNLAPVNFDALFMNYLQQQAAQQGAEQA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family [H]

Homologues:

Organism=Escherichia coli, GI1790038, Length=147, Percent_Identity=68.7074829931973, Blast_Score=221, Evalue=1e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003708 [H]

Pfam domain/function: PF02556 SecB [H]

EC number: NA

Molecular weight: Translated: 17257; Mature: 17126

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAAPQDTQQHFAIQRIFLKDVSFEAPNSPVMFQKEWNPDVKLDLDTQSRELGEGVYEV
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHH
ILRLTVTVKNAEETAFLCEVQQGGIFTAEKMEAGQLAHCLGAFCPNILFPYARETISSLV
HHHHHHEECCCCCCEEEEEECCCCEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKGTFPQLNLAPVNFDALFMNYLQQQAAQQGAEQA
HCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AEAAPQDTQQHFAIQRIFLKDVSFEAPNSPVMFQKEWNPDVKLDLDTQSRELGEGVYEV
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHH
ILRLTVTVKNAEETAFLCEVQQGGIFTAEKMEAGQLAHCLGAFCPNILFPYARETISSLV
HHHHHHEECCCCCCEEEEEECCCCEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKGTFPQLNLAPVNFDALFMNYLQQQAAQQGAEQA
HCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA