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The map label for this gene is nusB

Identifier: 23099336

GI number: 23099336

Start: 1914942

End: 1915322

Strand: Reverse

Name: nusB

Synonym: OB1881

Alternate gene names: 23099336

Gene position: 1915322-1914942 (Counterclockwise)

Preceding gene: 23099337

Following gene: 23099335

Centisome position: 52.76

GC content: 33.33

Gene sequence:

>381_bases
ATGAATCGACACAAAGCAAGAGAAAAAGCTTTTCAGGTCTTATTTCAGCTAGACATTAATGAGACGGAATTAGAAGAAGT
AATGGAAACACTAAAAGAAAAGGAAAGATACGATGTGTTCTTGAGATCGTTAGTTGAAGGAGTTATTCAACACAAGAGTG
TAATTGATGAAAAGATCTCTACACATCTAGAGAAATGGACAATAGATCGGATAGCTTCTGTAGAAAGAACGATTCTCCGA
ATGGCCATTTTAGAAATAATGTATATCGATGATATTCCGCAAAATGTTTCTATTAATGAAGCAATCGAACTGGCACATAC
ATTTGGGGATGAACAATCAGGAAAATTTGTAAATGGTGTTTTATCAAAAATTATTGCATAA

Upstream 100 bases:

>100_bases
TAAAATCGTTTATATGATATGGTTGAATCCTAGCCAAGTAAAAGAGAAACGTGTTATTATTTTAACAGTAAATGAAGGAA
TTAGAAGGAGTCAAAATAGA

Downstream 100 bases:

>100_bases
GGGAGAGAGAATTAACCAATGGCTACATTGTTAAATGGCAAAGAATTATCTGAAGAGTTAAAGCAAAAAATGAAAATAGA
AGTAGATGAATTAAAAGAAA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MNRHKAREKAFQVLFQLDINETELEEVMETLKEKERYDVFLRSLVEGVIQHKSVIDEKISTHLEKWTIDRIASVERTILR
MAILEIMYIDDIPQNVSINEAIELAHTFGDEQSGKFVNGVLSKIIA

Sequences:

>Translated_126_residues
MNRHKAREKAFQVLFQLDINETELEEVMETLKEKERYDVFLRSLVEGVIQHKSVIDEKISTHLEKWTIDRIASVERTILR
MAILEIMYIDDIPQNVSINEAIELAHTFGDEQSGKFVNGVLSKIIA
>Mature_126_residues
MNRHKAREKAFQVLFQLDINETELEEVMETLKEKERYDVFLRSLVEGVIQHKSVIDEKISTHLEKWTIDRIASVERTILR
MAILEIMYIDDIPQNVSINEAIELAHTFGDEQSGKFVNGVLSKIIA

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=120, Percent_Identity=36.6666666666667, Blast_Score=78, Evalue=2e-16,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_OCEIH (Q8EQ42)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692802.1
- ProteinModelPortal:   Q8EQ42
- SMR:   Q8EQ42
- GeneID:   1018373
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1881
- NMPDR:   fig|221109.1.peg.1881
- HOGENOM:   HBG734409
- OMA:   SHNDIAD
- ProtClustDB:   PRK00202
- BioCyc:   OIHE221109:OB1881-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 14642; Mature: 14642

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRHKAREKAFQVLFQLDINETELEEVMETLKEKERYDVFLRSLVEGVIQHKSVIDEKIS
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THLEKWTIDRIASVERTILRMAILEIMYIDDIPQNVSINEAIELAHTFGDEQSGKFVNGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
LSKIIA
HHHHCC
>Mature Secondary Structure
MNRHKAREKAFQVLFQLDINETELEEVMETLKEKERYDVFLRSLVEGVIQHKSVIDEKIS
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THLEKWTIDRIASVERTILRMAILEIMYIDDIPQNVSINEAIELAHTFGDEQSGKFVNGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
LSKIIA
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376