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The map label for this gene is yckB [H]

Identifier: 23098331

GI number: 23098331

Start: 928875

End: 929765

Strand: Direct

Name: yckB [H]

Synonym: OB0876

Alternate gene names: 23098331

Gene position: 928875-929765 (Clockwise)

Preceding gene: 23098330

Following gene: 23098332

Centisome position: 25.59

GC content: 37.26

Gene sequence:

>891_bases
GTGGAAGAAAAAATGAAGAAGGTAATGTTAAGCTTATTTGTACTCATGTTTATTCTGCTTTTAGCTGCGTGTGGAGCGAG
CGAAGAAACTGGAGAAACACCAGAGAATAGTGATAATGAAGAAACAGCATCTGATGAACGATGGGAAAGTGTGCAACAAT
CTGGGGAACTTGTTGTTGGGACATCGGGAACATTAATTGCTGCGTCTTATTACGATGATGAGGATGAATTAACTGGTTAT
GATGTAGAGATTATGAAAGAAATTGCTAAGCGATTAGATGTAGAGATTAAATTTGAAATTATGGGCATAGACAGTATGTT
ACCAGCTGTTCAAAGTGGAAGAATAGATTTAGCTGCAAATGATATCGAAATAACCGATAAACGTAAGGAGCAATTTAATT
TCAGTGAACCTTATAAGTATTCTTATGCTACAATGGCGGTTCGTGAATCAGATAATTCCGGAATTGAAAGTTTGGAGGAT
TTAGAAGGTAAAAAAGCTGGTGGTGGTGCGACCACTATATATAGCCAAATTGCAGAACATTATGGTGCGGAAGTCGTTAC
TTATGGGAATGCACCGAACGAGGCTTATTTAAGTGATGTAAGTAATGGAAGAACAGATGTAGTAGTCAACGACTATTACT
TAACTAAGTTTGGGGTAGCTGCTTTTCCTGATTTTGATTTGCACTTACATCCGACCATTAAATTCCATCCTAGTCAACAA
GGTGTGATTATGCCAAAAGACGCGGATGTTATGACAGAAGAAATCAACAACGTACTTCAAGAAATGAGAGAAGATGGAAC
ATTAAGCGAACTAGCAAAACAATTTTATGAAGAAGATGCGTCTGTAGAACCTGAAGAAGAGATTGAAGAAATTGATGGAT
TAGGTTTGTAA

Upstream 100 bases:

>100_bases
TTGTGAATGTAATAATTTATACAGTTTATACTAATTCTTTTACACATAGATGTTATCTGTTATAATAATTTTCAGATTCA
TATTATAACAATAGGGGACG

Downstream 100 bases:

>100_bases
AAGGTGTTAATAGATGACTATTATTTTAATGACAAAGTTGTTTAATATTTTTGATGTTGAACTTGCTTTACAAAATTTAC
CTTTCATATTAGAGGGGTTA

Product: amino acid ABC transporter substrate-binding protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MEEKMKKVMLSLFVLMFILLLAACGASEETGETPENSDNEETASDERWESVQQSGELVVGTSGTLIAASYYDDEDELTGY
DVEIMKEIAKRLDVEIKFEIMGIDSMLPAVQSGRIDLAANDIEITDKRKEQFNFSEPYKYSYATMAVRESDNSGIESLED
LEGKKAGGGATTIYSQIAEHYGAEVVTYGNAPNEAYLSDVSNGRTDVVVNDYYLTKFGVAAFPDFDLHLHPTIKFHPSQQ
GVIMPKDADVMTEEINNVLQEMREDGTLSELAKQFYEEDASVEPEEEIEEIDGLGL

Sequences:

>Translated_296_residues
MEEKMKKVMLSLFVLMFILLLAACGASEETGETPENSDNEETASDERWESVQQSGELVVGTSGTLIAASYYDDEDELTGY
DVEIMKEIAKRLDVEIKFEIMGIDSMLPAVQSGRIDLAANDIEITDKRKEQFNFSEPYKYSYATMAVRESDNSGIESLED
LEGKKAGGGATTIYSQIAEHYGAEVVTYGNAPNEAYLSDVSNGRTDVVVNDYYLTKFGVAAFPDFDLHLHPTIKFHPSQQ
GVIMPKDADVMTEEINNVLQEMREDGTLSELAKQFYEEDASVEPEEEIEEIDGLGL
>Mature_296_residues
MEEKMKKVMLSLFVLMFILLLAACGASEETGETPENSDNEETASDERWESVQQSGELVVGTSGTLIAASYYDDEDELTGY
DVEIMKEIAKRLDVEIKFEIMGIDSMLPAVQSGRIDLAANDIEITDKRKEQFNFSEPYKYSYATMAVRESDNSGIESLED
LEGKKAGGGATTIYSQIAEHYGAEVVTYGNAPNEAYLSDVSNGRTDVVVNDYYLTKFGVAAFPDFDLHLHPTIKFHPSQQ
GVIMPKDADVMTEEINNVLQEMREDGTLSELAKQFYEEDASVEPEEEIEEIDGLGL

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=238, Percent_Identity=31.0924369747899, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787031, Length=230, Percent_Identity=28.2608695652174, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788648, Length=234, Percent_Identity=27.3504273504274, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788649, Length=229, Percent_Identity=27.5109170305677, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787085, Length=206, Percent_Identity=23.3009708737864, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787088, Length=220, Percent_Identity=21.8181818181818, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015683
- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 32904; Mature: 32904

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKMKKVMLSLFVLMFILLLAACGASEETGETPENSDNEETASDERWESVQQSGELVVG
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
TSGTLIAASYYDDEDELTGYDVEIMKEIAKRLDVEIKFEIMGIDSMLPAVQSGRIDLAAN
CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECHHHHHHHHCCCEEEEEC
DIEITDKRKEQFNFSEPYKYSYATMAVRESDNSGIESLEDLEGKKAGGGATTIYSQIAEH
CEEECCCHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHH
YGAEVVTYGNAPNEAYLSDVSNGRTDVVVNDYYLTKFGVAAFPDFDLHLHPTIKFHPSQQ
HCCEEEEECCCCCHHHHHHCCCCCCEEEEECEEHHHHCHHCCCCCCEEECCEEEECCCCC
GVIMPKDADVMTEEINNVLQEMREDGTLSELAKQFYEEDASVEPEEEIEEIDGLGL
CEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MEEKMKKVMLSLFVLMFILLLAACGASEETGETPENSDNEETASDERWESVQQSGELVVG
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
TSGTLIAASYYDDEDELTGYDVEIMKEIAKRLDVEIKFEIMGIDSMLPAVQSGRIDLAAN
CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECHHHHHHHHCCCEEEEEC
DIEITDKRKEQFNFSEPYKYSYATMAVRESDNSGIESLEDLEGKKAGGGATTIYSQIAEH
CEEECCCHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHH
YGAEVVTYGNAPNEAYLSDVSNGRTDVVVNDYYLTKFGVAAFPDFDLHLHPTIKFHPSQQ
HCCEEEEECCCCCHHHHHHCCCCCCEEEEECEEHHHHCHHCCCCCCEEECCEEEECCCCC
GVIMPKDADVMTEEINNVLQEMREDGTLSELAKQFYEEDASVEPEEEIEEIDGLGL
CEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 9384377 [H]