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The map label for this gene is yckA [H]

Identifier: 23098332

GI number: 23098332

Start: 929779

End: 930471

Strand: Direct

Name: yckA [H]

Synonym: OB0877

Alternate gene names: 23098332

Gene position: 929779-930471 (Clockwise)

Preceding gene: 23098331

Following gene: 23098333

Centisome position: 25.61

GC content: 34.2

Gene sequence:

>693_bases
ATGACTATTATTTTAATGACAAAGTTGTTTAATATTTTTGATGTTGAACTTGCTTTACAAAATTTACCTTTCATATTAGA
GGGGTTACCCTATACAATCATGATTGCCGTAGCAGGTATGGCAATTGGATTAATTTTTGGCTTATTTCTTGCATTGGCGA
GAGATTCAAAAACAATACTATTACGTTGGCCGTCTAGAATCTATATATCCTTTATGAGGGGAACACCAATGCTTGTCTTT
CTCTTTATTATATATTTTGGATTACCTTACATGGGGATTGAGCTATCGGCTATTTCAGCTGCGATTCTAGGGTTTGGGCT
TAATAGTGCTGCTTATATTGCGGAAATTAATCGTTCATCGTTAAATAGTGTTGATAGAGGACAATGGGAATCAGCAAAAG
CACTTAATATGACTTATTGGCATACATTACGAAAAATTATTTTGCCACAAGCAACAAGAATAGCAATTCCACCATTGACC
AATGTTTTTATGGATATCGTTAAGGCGACATCATTAACTGCGGTAATAACTGTGCCCGAACTTTTCCAAAAAGCACAGAT
TGTAACAGGTCGAGAATTTGATGCGATGACAGTGTATATTTTAGTTGCTTTAATATATTGGCCGATTTGTATTTTGATTG
GAATGCTTCAAGAAAGATTAGAAAAAAGATACAGCGTTTATGTAGCTAAATAA

Upstream 100 bases:

>100_bases
AGCGAACTAGCAAAACAATTTTATGAAGAAGATGCGTCTGTAGAACCTGAAGAAGAGATTGAAGAAATTGATGGATTAGG
TTTGTAAAAGGTGTTAATAG

Downstream 100 bases:

>100_bases
AATAGTTTTTTTAATAAGAGTGAGATTCAGGCAAAAGTAGAAATAAGCCTCAATCTTGCTTTTTTAAATTAACTTATGCT
ATTAAATACCATTTTTGAAT

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MTIILMTKLFNIFDVELALQNLPFILEGLPYTIMIAVAGMAIGLIFGLFLALARDSKTILLRWPSRIYISFMRGTPMLVF
LFIIYFGLPYMGIELSAISAAILGFGLNSAAYIAEINRSSLNSVDRGQWESAKALNMTYWHTLRKIILPQATRIAIPPLT
NVFMDIVKATSLTAVITVPELFQKAQIVTGREFDAMTVYILVALIYWPICILIGMLQERLEKRYSVYVAK

Sequences:

>Translated_230_residues
MTIILMTKLFNIFDVELALQNLPFILEGLPYTIMIAVAGMAIGLIFGLFLALARDSKTILLRWPSRIYISFMRGTPMLVF
LFIIYFGLPYMGIELSAISAAILGFGLNSAAYIAEINRSSLNSVDRGQWESAKALNMTYWHTLRKIILPQATRIAIPPLT
NVFMDIVKATSLTAVITVPELFQKAQIVTGREFDAMTVYILVALIYWPICILIGMLQERLEKRYSVYVAK
>Mature_229_residues
TIILMTKLFNIFDVELALQNLPFILEGLPYTIMIAVAGMAIGLIFGLFLALARDSKTILLRWPSRIYISFMRGTPMLVFL
FIIYFGLPYMGIELSAISAAILGFGLNSAAYIAEINRSSLNSVDRGQWESAKALNMTYWHTLRKIILPQATRIAIPPLTN
VFMDIVKATSLTAVITVPELFQKAQIVTGREFDAMTVYILVALIYWPICILIGMLQERLEKRYSVYVAK

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=210, Percent_Identity=47.1428571428571, Blast_Score=216, Evalue=7e-58,
Organism=Escherichia coli, GI1787030, Length=216, Percent_Identity=34.7222222222222, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI87082239, Length=204, Percent_Identity=36.7647058823529, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=29.2237442922374, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788645, Length=211, Percent_Identity=29.8578199052133, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1787086, Length=215, Percent_Identity=30.6976744186047, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787087, Length=216, Percent_Identity=27.3148148148148, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788646, Length=217, Percent_Identity=26.7281105990783, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994930, Length=134, Percent_Identity=33.5820895522388, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786874, Length=226, Percent_Identity=24.3362831858407, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25912; Mature: 25780

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIILMTKLFNIFDVELALQNLPFILEGLPYTIMIAVAGMAIGLIFGLFLALARDSKTIL
CEEEEEEHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LRWPSRIYISFMRGTPMLVFLFIIYFGLPYMGIELSAISAAILGFGLNSAAYIAEINRSS
EECCHHHEEEHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCHHH
LNSVDRGQWESAKALNMTYWHTLRKIILPQATRIAIPPLTNVFMDIVKATSLTAVITVPE
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHEEEHHH
LFQKAQIVTGREFDAMTVYILVALIYWPICILIGMLQERLEKRYSVYVAK
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
>Mature Secondary Structure 
TIILMTKLFNIFDVELALQNLPFILEGLPYTIMIAVAGMAIGLIFGLFLALARDSKTIL
EEEEEEHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LRWPSRIYISFMRGTPMLVFLFIIYFGLPYMGIELSAISAAILGFGLNSAAYIAEINRSS
EECCHHHEEEHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCHHH
LNSVDRGQWESAKALNMTYWHTLRKIILPQATRIAIPPLTNVFMDIVKATSLTAVITVPE
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHEEEHHH
LFQKAQIVTGREFDAMTVYILVALIYWPICILIGMLQERLEKRYSVYVAK
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]