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The map label for this gene is yfkH [H]

Identifier: 23098330

GI number: 23098330

Start: 927877

End: 928701

Strand: Direct

Name: yfkH [H]

Synonym: OB0875

Alternate gene names: 23098330

Gene position: 927877-928701 (Clockwise)

Preceding gene: 23098329

Following gene: 23098331

Centisome position: 25.56

GC content: 31.88

Gene sequence:

>825_bases
TTGGAAAGTTGGATAAGCCTAGGCAAGAAATTTTATCAACGAATAGAAGAGGTTGATGTATTTGGTTTGGCAGCACAACT
TGCTTATTTCTTTTTGTTATCTTTATTCCCTTTTCTATTGTTTTTACTTAATCTAATCGCCTATTTACCGATTGATATTG
AGCTTATTATGCAGACGATTGGTACATTTGCTCCTGAACAAGTAATGCAATTGATTTCTACAAATTTAGATACGTTAACC
GAACAAAATACTGGTCTTTTATCAATTAGTATTTTAGGTACCTTATGGGCAGCTTCAAATGGTGTGAATGCAATTACAAG
AGCTTTTAATAGATCTTATTGGATTGATACGGAGCGTTCATTCTTTACGACAAGATTAATATCTATTGTATTAACAATTG
GCATGGTTATTATCATTTTATTAGCTCTGTTGTTACCTGTATTTGGAAGAATGATTGGTTTGTATGTATTTTCTATGTTT
GGATTTACAACTGGGTTTATCGAAATTTGGGAGACCCTAAGGTGGATTATCTCCTCCGCTATTTTCTTTATAGTTCTATT
ATTTTTATATAAGCTAGCACCACATAAACGGATTGTCTTTTCAGAAGTAATATGGGGGACAGTATTTGCTACTTTTTCTT
GGCAGTTAGTATCGTGGGGTTTTTCTTTTTATGTTAATAATTTAGGAAATTACTCCACGACTTACGGAAGTTTAGGAACG
GTTATCGTTTTGATGATTTGGTTTTATTTGTTTGGAATTATCATTATCACTGGCGGAGTATTAAATGCTTTTATACAAGA
TCAACGAAAAAGAATTTTTAAATAA

Upstream 100 bases:

>100_bases
TCTAGAACAAGTAGAACAAACTTTAGATAAAGTTACGAATAAAATAGATCGAAAAGAAATAGAGTAATACAAGAGAGGAT
GACAGGGGGAGAGAGATACA

Downstream 100 bases:

>100_bases
ATTGAAGCCGAAGGAAAATAAAATTTATTTTCCTTGGCTTTTTTAATATATATGATTCTTCCTGTTATACATATTGTGAA
TGTAATAATTTATACAGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MESWISLGKKFYQRIEEVDVFGLAAQLAYFFLLSLFPFLLFLLNLIAYLPIDIELIMQTIGTFAPEQVMQLISTNLDTLT
EQNTGLLSISILGTLWAASNGVNAITRAFNRSYWIDTERSFFTTRLISIVLTIGMVIIILLALLLPVFGRMIGLYVFSMF
GFTTGFIEIWETLRWIISSAIFFIVLLFLYKLAPHKRIVFSEVIWGTVFATFSWQLVSWGFSFYVNNLGNYSTTYGSLGT
VIVLMIWFYLFGIIIITGGVLNAFIQDQRKRIFK

Sequences:

>Translated_274_residues
MESWISLGKKFYQRIEEVDVFGLAAQLAYFFLLSLFPFLLFLLNLIAYLPIDIELIMQTIGTFAPEQVMQLISTNLDTLT
EQNTGLLSISILGTLWAASNGVNAITRAFNRSYWIDTERSFFTTRLISIVLTIGMVIIILLALLLPVFGRMIGLYVFSMF
GFTTGFIEIWETLRWIISSAIFFIVLLFLYKLAPHKRIVFSEVIWGTVFATFSWQLVSWGFSFYVNNLGNYSTTYGSLGT
VIVLMIWFYLFGIIIITGGVLNAFIQDQRKRIFK
>Mature_274_residues
MESWISLGKKFYQRIEEVDVFGLAAQLAYFFLLSLFPFLLFLLNLIAYLPIDIELIMQTIGTFAPEQVMQLISTNLDTLT
EQNTGLLSISILGTLWAASNGVNAITRAFNRSYWIDTERSFFTTRLISIVLTIGMVIIILLALLLPVFGRMIGLYVFSMF
GFTTGFIEIWETLRWIISSAIFFIVLLFLYKLAPHKRIVFSEVIWGTVFATFSWQLVSWGFSFYVNNLGNYSTTYGSLGT
VIVLMIWFYLFGIIIITGGVLNAFIQDQRKRIFK

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 31396; Mature: 31396

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESWISLGKKFYQRIEEVDVFGLAAQLAYFFLLSLFPFLLFLLNLIAYLPIDIELIMQTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
GTFAPEQVMQLISTNLDTLTEQNTGLLSISILGTLWAASNGVNAITRAFNRSYWIDTERS
HCCCHHHHHHHHHCCHHHHHCCCCCEEHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHH
FFTTRLISIVLTIGMVIIILLALLLPVFGRMIGLYVFSMFGFTTGFIEIWETLRWIISSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFFIVLLFLYKLAPHKRIVFSEVIWGTVFATFSWQLVSWGFSFYVNNLGNYSTTYGSLGT
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VIVLMIWFYLFGIIIITGGVLNAFIQDQRKRIFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MESWISLGKKFYQRIEEVDVFGLAAQLAYFFLLSLFPFLLFLLNLIAYLPIDIELIMQTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
GTFAPEQVMQLISTNLDTLTEQNTGLLSISILGTLWAASNGVNAITRAFNRSYWIDTERS
HCCCHHHHHHHHHCCHHHHHCCCCCEEHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHH
FFTTRLISIVLTIGMVIIILLALLLPVFGRMIGLYVFSMFGFTTGFIEIWETLRWIISSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFFIVLLFLYKLAPHKRIVFSEVIWGTVFATFSWQLVSWGFSFYVNNLGNYSTTYGSLGT
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VIVLMIWFYLFGIIIITGGVLNAFIQDQRKRIFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]