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The map label for this gene is abrB [H]

Identifier: 23097500

GI number: 23097500

Start: 44806

End: 45081

Strand: Reverse

Name: abrB [H]

Synonym: OB0045

Alternate gene names: 23097500

Gene position: 45081-44806 (Counterclockwise)

Preceding gene: 23097527

Following gene: 23097480

Centisome position: 1.24

GC content: 37.68

Gene sequence:

>276_bases
ATGAAATCAACTGGAATTGTACGTAAGGTCGATGAATTAGGCCGTGTAGTCATACCAATTGAATTACGTCGCACATTGGA
CATCCACGAAAAAGACACAATGGAGATCTATGTAGACAATGATAAAATTGTTCTCAAGAAATACAAACCTAATATGACTT
GTCAAGTTACTGGAGAAGTATCCGATGAAAACCTGTCTATTGCAAACGGTAACTTAGTCCTCAGTCCAGCAGGCGCTCAA
ATTCTGTTGGAAGAAATTCAATCACGTTTCAAATAA

Upstream 100 bases:

>100_bases
GCGATTTTTTTATGTAGTATCATCAATAAGGAAAATTCGGATAAACACTTGTATGAGGAGAGTTAATATCCGTGTTTTTC
GAGTATGGGGGAGTCAAACA

Downstream 100 bases:

>100_bases
GCCATATTTGGTATCAAATCTTTTTTACGTTTTATAAAGAAAGCTGACAATCCATTTGAATTGTCAGCTTTCTTTATGTT
TGAATATGATAGGCTTGATA

Product: transcriptional pleiotropic regulator of transition state genes

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MKSTGIVRKVDELGRVVIPIELRRTLDIHEKDTMEIYVDNDKIVLKKYKPNMTCQVTGEVSDENLSIANGNLVLSPAGAQ
ILLEEIQSRFK

Sequences:

>Translated_91_residues
MKSTGIVRKVDELGRVVIPIELRRTLDIHEKDTMEIYVDNDKIVLKKYKPNMTCQVTGEVSDENLSIANGNLVLSPAGAQ
ILLEEIQSRFK
>Mature_91_residues
MKSTGIVRKVDELGRVVIPIELRRTLDIHEKDTMEIYVDNDKIVLKKYKPNMTCQVTGEVSDENLSIANGNLVLSPAGAQ
ILLEEIQSRFK

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 10270; Mature: 10270

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLDIHEKDTMEIYVDNDKIVLKKYKPNMTCQVTGEV
CCCCCCEEEHHHCCEEEEEEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCC
SDENLSIANGNLVLSPAGAQILLEEIQSRFK
CCCCEEEECCCEEEECCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLDIHEKDTMEIYVDNDKIVLKKYKPNMTCQVTGEV
CCCCCCEEEHHHCCEEEEEEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCC
SDENLSIANGNLVLSPAGAQILLEEIQSRFK
CCCCEEEECCCEEEECCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]