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The map label for this gene is yckB [H]

Identifier: 21910155

GI number: 21910155

Start: 679082

End: 679945

Strand: Direct

Name: yckB [H]

Synonym: SpyM3_0619

Alternate gene names: 21910155

Gene position: 679082-679945 (Clockwise)

Preceding gene: 21910154

Following gene: 21910156

Centisome position: 35.73

GC content: 37.62

Gene sequence:

>864_bases
ATGAAGAAATCAGTTACTTTACTGTCTATCGGACTTGCCAGCCTTTTATTGGCAGCATGTGCGCCACATAAATCTCAAAA
ATCAAGTTGGGAGACTATCAAAGAAAAAGGGGTGTTAAAAGTAGCTACCCCAGGAACCTATCAGCCAACTTCTTTTTACA
ACGATAATAATGAGTTAGTAGGTTACGAAGTAGATATGGTCAAGGAAATCGGTAAACGACTTAACATTAAAGTCAAGTTT
GTTGAAACAGGATTTGACCAAGCCTTTACCTCAGTTGATAGTGGTCGAGTGGATATTTCTTTGAACAACTTTGACATTAC
CCCAAAACGTCAGAAAAAATACAATATCTCTACGCCTTATAAATACGGGGTAGGAGGCATGATTGTCCGTGCTGATGGCA
GCTCAAACATGGCTAAAAAAGATCTTAGCGACTGGAAAGGAAAAAAAGCAGCTGGCGCTTCTGGAACAGAGTACATGAAA
GTAGCGCAAAAACAGGGAGCTGAACTGGTGACCTACGATAATGTTACAGGAGATGTTTATCTAAACGATGTGGCTAACGG
TCGAACAGATTTCATTCCAAATGATTACCCAGCTCAAAAATTATTTGTGGATTACATGTTATCTCAAAATCCAAATCTAA
ATGTCAAAATGAGCGATGTTCAGTACAACCCAACCGAACAAGGAATTGTTATGAACAAAAAAGACGATAGCCTCAAGAAA
AAAATAGATGCTGTTATTAAAGACATGATAAAAGATGGTAGCTTGAAGAAAATATCTGAAACCTACTATGCTGGTCAAGA
TTTGACAAAACCTTTTGGCAAAGACAAAAAAATTCCCATCATTGATACGAAAGACGTTAACTAA

Upstream 100 bases:

>100_bases
TTAACTATTATAGATTAACTTTTTAAAGAGATTGAGCGCTCACTGATAACACAACTTAATCAAAATGTTATACTATTCTT
ATCTTAATAAAGGAGTTACT

Downstream 100 bases:

>100_bases
TACTTGATGTTAAAGGAGTCCTAACCACATGATTAATATCCCATTAATGAAAGATAGTTTAGGATTTGTATTATCGGGAT
TACCTTATACCCTTGGCATA

Product: putative ABC transporter (binding protein)

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MKKSVTLLSIGLASLLLAACAPHKSQKSSWETIKEKGVLKVATPGTYQPTSFYNDNNELVGYEVDMVKEIGKRLNIKVKF
VETGFDQAFTSVDSGRVDISLNNFDITPKRQKKYNISTPYKYGVGGMIVRADGSSNMAKKDLSDWKGKKAAGASGTEYMK
VAQKQGAELVTYDNVTGDVYLNDVANGRTDFIPNDYPAQKLFVDYMLSQNPNLNVKMSDVQYNPTEQGIVMNKKDDSLKK
KIDAVIKDMIKDGSLKKISETYYAGQDLTKPFGKDKKIPIIDTKDVN

Sequences:

>Translated_287_residues
MKKSVTLLSIGLASLLLAACAPHKSQKSSWETIKEKGVLKVATPGTYQPTSFYNDNNELVGYEVDMVKEIGKRLNIKVKF
VETGFDQAFTSVDSGRVDISLNNFDITPKRQKKYNISTPYKYGVGGMIVRADGSSNMAKKDLSDWKGKKAAGASGTEYMK
VAQKQGAELVTYDNVTGDVYLNDVANGRTDFIPNDYPAQKLFVDYMLSQNPNLNVKMSDVQYNPTEQGIVMNKKDDSLKK
KIDAVIKDMIKDGSLKKISETYYAGQDLTKPFGKDKKIPIIDTKDVN
>Mature_287_residues
MKKSVTLLSIGLASLLLAACAPHKSQKSSWETIKEKGVLKVATPGTYQPTSFYNDNNELVGYEVDMVKEIGKRLNIKVKF
VETGFDQAFTSVDSGRVDISLNNFDITPKRQKKYNISTPYKYGVGGMIVRADGSSNMAKKDLSDWKGKKAAGASGTEYMK
VAQKQGAELVTYDNVTGDVYLNDVANGRTDFIPNDYPAQKLFVDYMLSQNPNLNVKMSDVQYNPTEQGIVMNKKDDSLKK
KIDAVIKDMIKDGSLKKISETYYAGQDLTKPFGKDKKIPIIDTKDVN

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=241, Percent_Identity=32.3651452282158, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787085, Length=269, Percent_Identity=29.7397769516729, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787088, Length=255, Percent_Identity=27.843137254902, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788649, Length=269, Percent_Identity=25.2788104089219, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788648, Length=231, Percent_Identity=24.6753246753247, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015683
- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 31846; Mature: 31846

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSVTLLSIGLASLLLAACAPHKSQKSSWETIKEKGVLKVATPGTYQPTSFYNDNNELV
CCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCEECCCCCEE
GYEVDMVKEIGKRLNIKVKFVETGFDQAFTSVDSGRVDISLNNFDITPKRQKKYNISTPY
EEEHHHHHHHHHHCEEEEEEEECCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCE
KYGVGGMIVRADGSSNMAKKDLSDWKGKKAAGASGTEYMKVAQKQGAELVTYDNVTGDVY
EECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEE
LNDVANGRTDFIPNDYPAQKLFVDYMLSQNPNLNVKMSDVQYNPTEQGIVMNKKDDSLKK
EECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCEECCCCCCEEEECCCHHHHH
KIDAVIKDMIKDGSLKKISETYYAGQDLTKPFGKDKKIPIIDTKDVN
HHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCCCCCCCCCEECCCCCC
>Mature Secondary Structure
MKKSVTLLSIGLASLLLAACAPHKSQKSSWETIKEKGVLKVATPGTYQPTSFYNDNNELV
CCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCEECCCCCEE
GYEVDMVKEIGKRLNIKVKFVETGFDQAFTSVDSGRVDISLNNFDITPKRQKKYNISTPY
EEEHHHHHHHHHHCEEEEEEEECCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCE
KYGVGGMIVRADGSSNMAKKDLSDWKGKKAAGASGTEYMKVAQKQGAELVTYDNVTGDVY
EECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEE
LNDVANGRTDFIPNDYPAQKLFVDYMLSQNPNLNVKMSDVQYNPTEQGIVMNKKDDSLKK
EECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCEECCCCCCEEEECCCHHHHH
KIDAVIKDMIKDGSLKKISETYYAGQDLTKPFGKDKKIPIIDTKDVN
HHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCCCCCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 9384377 [H]