Click here to switch to the map view.

The map label for this gene is yckA [H]

Identifier: 21910156

GI number: 21910156

Start: 679974

End: 680624

Strand: Direct

Name: yckA [H]

Synonym: SpyM3_0620

Alternate gene names: 21910156

Gene position: 679974-680624 (Clockwise)

Preceding gene: 21910155

Following gene: 21910157

Centisome position: 35.78

GC content: 39.32

Gene sequence:

>651_bases
ATGATTAATATCCCATTAATGAAAGATAGTTTAGGATTTGTATTATCGGGATTACCTTATACCCTTGGCATATCGTTGCT
TAGCTTTTTAACGGGGCTGGTCTTTGGTTTGCTCCTTGCCCTACTAGGAAGGTCACATCAGCCACTGCTACACTATCTTG
TTAGGGCCTACATCTCTATTATGCGAGGTGTGCCGATGATCGTGGTGCTCTTTGTTCTTTATTTCGGGTTGCCTTATTAT
GGTTTAGAATTGCCAGCTTTACTTTGCGCTTATCTTGGTTTTTCTATGGTTAGCGCTGCCTATATTTCTGAAGTTTTTCG
CTCTTCTATAGAAGCTATTGACAAGGGACAGTGGGAAGCAGCTAAGGCTTTAGGGTTGCCATATGCTCTTATGGTTAAGA
AAATTATTCTTCCTCAAGCCTTTCGAATTGCAGTTCCTCCTCTAGGCAATGTCATTATTGATATGGTTAAAAGTTCGTCG
CTAGCTGCCATGATTACCGTACCAGATATTTTTCAAAATGCCAAAATTATCGGTGGTAGGGAGTGGGACTACATGTCCAT
GTACATTTTAGTAGCCTTTATCTATTGGATTATTGCTTTTTTGTTAGAACGTTACCAAGAATTCTTAGAAAATAAGCTAG
CACTTGTTTAA

Upstream 100 bases:

>100_bases
GGTCAAGATTTGACAAAACCTTTTGGCAAAGACAAAAAAATTCCCATCATTGATACGAAAGACGTTAACTAATACTTGAT
GTTAAAGGAGTCCTAACCAC

Downstream 100 bases:

>100_bases
TATCCTGTAAAAAACGAATATTAACCCTGGAAATATCATATTTTCAGGGTCTTTCTATTTAAAATGTGGTAAACTAGATA
GAAAAGGACATCGTATTTAA

Product: putative ABC transporter (permease)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MINIPLMKDSLGFVLSGLPYTLGISLLSFLTGLVFGLLLALLGRSHQPLLHYLVRAYISIMRGVPMIVVLFVLYFGLPYY
GLELPALLCAYLGFSMVSAAYISEVFRSSIEAIDKGQWEAAKALGLPYALMVKKIILPQAFRIAVPPLGNVIIDMVKSSS
LAAMITVPDIFQNAKIIGGREWDYMSMYILVAFIYWIIAFLLERYQEFLENKLALV

Sequences:

>Translated_216_residues
MINIPLMKDSLGFVLSGLPYTLGISLLSFLTGLVFGLLLALLGRSHQPLLHYLVRAYISIMRGVPMIVVLFVLYFGLPYY
GLELPALLCAYLGFSMVSAAYISEVFRSSIEAIDKGQWEAAKALGLPYALMVKKIILPQAFRIAVPPLGNVIIDMVKSSS
LAAMITVPDIFQNAKIIGGREWDYMSMYILVAFIYWIIAFLLERYQEFLENKLALV
>Mature_216_residues
MINIPLMKDSLGFVLSGLPYTLGISLLSFLTGLVFGLLLALLGRSHQPLLHYLVRAYISIMRGVPMIVVLFVLYFGLPYY
GLELPALLCAYLGFSMVSAAYISEVFRSSIEAIDKGQWEAAKALGLPYALMVKKIILPQAFRIAVPPLGNVIIDMVKSSS
LAAMITVPDIFQNAKIIGGREWDYMSMYILVAFIYWIIAFLLERYQEFLENKLALV

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=44.5497630331754, Blast_Score=183, Evalue=6e-48,
Organism=Escherichia coli, GI87082239, Length=204, Percent_Identity=38.2352941176471, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1786873, Length=213, Percent_Identity=32.8638497652582, Blast_Score=110, Evalue=5e-26,
Organism=Escherichia coli, GI1787086, Length=220, Percent_Identity=31.3636363636364, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1788645, Length=203, Percent_Identity=32.0197044334975, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787087, Length=209, Percent_Identity=27.2727272727273, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787030, Length=203, Percent_Identity=31.0344827586207, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI48994930, Length=87, Percent_Identity=42.5287356321839, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788646, Length=212, Percent_Identity=24.0566037735849, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1786874, Length=191, Percent_Identity=29.8429319371728, Blast_Score=80, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24125; Mature: 24125

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINIPLMKDSLGFVLSGLPYTLGISLLSFLTGLVFGLLLALLGRSHQPLLHYLVRAYISI
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MRGVPMIVVLFVLYFGLPYYGLELPALLCAYLGFSMVSAAYISEVFRSSIEAIDKGQWEA
HCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
AKALGLPYALMVKKIILPQAFRIAVPPLGNVIIDMVKSSSLAAMITVPDIFQNAKIIGGR
HHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCCCCCC
EWDYMSMYILVAFIYWIIAFLLERYQEFLENKLALV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MINIPLMKDSLGFVLSGLPYTLGISLLSFLTGLVFGLLLALLGRSHQPLLHYLVRAYISI
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MRGVPMIVVLFVLYFGLPYYGLELPALLCAYLGFSMVSAAYISEVFRSSIEAIDKGQWEA
HCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
AKALGLPYALMVKKIILPQAFRIAVPPLGNVIIDMVKSSSLAAMITVPDIFQNAKIIGGR
HHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCCCCCC
EWDYMSMYILVAFIYWIIAFLLERYQEFLENKLALV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]