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The map label for this gene is cyoD

Identifier: 30410824

GI number: 30410824

Start: 514996

End: 515322

Strand: Reverse

Name: cyoD

Synonym: BUsg453

Alternate gene names: 30410824

Gene position: 515322-514996 (Counterclockwise)

Preceding gene: 21672719

Following gene: 21672717

Centisome position: 80.34

GC content: 14.98

Gene sequence:

>327_bases
ATGAATAAATATAAAAAAATAAAAAATAATTTTGATAAAGAAAAAAAGTCTTATATAGTAGGTTTTTTATTTTCTTTATT
TTTAACTATTATTCCCTTTTTTTGTACTTTAAATCATTTATTTTCTAGAAAGATTAATTTTTTTGTAATTTTACTATGTG
CTTTAAGTCAAATTATAATTCATTTTATATATTTTTTACATTTAGATTTTTCTAAAAAAAATTCATGGAACATTATATCT
TTATTATTTATATTAATTATTGTTTTTATTATTGTGTTCGGTTCTATATGGATTATGTATAATTTAAATCATCATGTTAT
TTTGTAA

Upstream 100 bases:

>100_bases
CTATTCGCATTCGAATATTATGTTTTAGTTTATTTTGGCATTTTTTAGACATTATATGGATCTGTGTTTTTACTTTTGTT
TATTTAAATGGAGTTATTTA

Downstream 100 bases:

>100_bases
CTATTACTTACTTAAAAGTATTTTATCTATATGTTAAAAGATTATTTAGAAATAACGAAACCTCGTATTATTATTGGAAA
TATTATTTTAATAATAGGTA

Product: cytochrome O ubiquinol oxidase D

Products: Ubiquinone-8; H2O [C]

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MNKYKKIKNNFDKEKKSYIVGFLFSLFLTIIPFFCTLNHLFSRKINFFVILLCALSQIIIHFIYFLHLDFSKKNSWNIIS
LLFILIIVFIIVFGSIWIMYNLNHHVIL

Sequences:

>Translated_108_residues
MNKYKKIKNNFDKEKKSYIVGFLFSLFLTIIPFFCTLNHLFSRKINFFVILLCALSQIIIHFIYFLHLDFSKKNSWNIIS
LLFILIIVFIIVFGSIWIMYNLNHHVIL
>Mature_108_residues
MNKYKKIKNNFDKEKKSYIVGFLFSLFLTIIPFFCTLNHLFSRKINFFVILLCALSQIIIHFIYFLHLDFSKKNSWNIIS
LLFILIIVFIIVFGSIWIMYNLNHHVIL

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family

Homologues:

Organism=Escherichia coli, GI1786632, Length=93, Percent_Identity=36.5591397849462, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYOD_BUCAP (Q8K996)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660785.2
- EnsemblBacteria:   EBBUCT00000000136
- GeneID:   1005712
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg453
- GeneTree:   EBGT00050000008024
- HOGENOM:   HBG534482
- OMA:   LNTNMMP
- ProtClustDB:   CLSK316275
- BioCyc:   BAPH198804:BUSG453-MONOMER
- GO:   GO:0006810
- InterPro:   IPR005171
- InterPro:   IPR014210
- TIGRFAMs:   TIGR02847

Pfam domain/function: PF03626 COX4_pro

EC number: NA

Molecular weight: Translated: 12995; Mature: 12995

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbae38d0)-; HASH(0xc3a8318)-; HASH(0xca7ad54)-;

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYKKIKNNFDKEKKSYIVGFLFSLFLTIIPFFCTLNHLFSRKINFFVILLCALSQIII
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFIYFLHLDFSKKNSWNIISLLFILIIVFIIVFGSIWIMYNLNHHVIL
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEH
>Mature Secondary Structure
MNKYKKIKNNFDKEKKSYIVGFLFSLFLTIIPFFCTLNHLFSRKINFFVILLCALSQIII
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFIYFLHLDFSKKNSWNIISLLFILIIVFIIVFGSIWIMYNLNHHVIL
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438