Click here to switch to the map view.

The map label for this gene is deoB

Identifier: 21672787

GI number: 21672787

Start: 576151

End: 577380

Strand: Reverse

Name: deoB

Synonym: BUsg522

Alternate gene names: 21672787

Gene position: 577380-576151 (Counterclockwise)

Preceding gene: 21672788

Following gene: 21672786

Centisome position: 90.01

GC content: 28.86

Gene sequence:

>1230_bases
ATGAAACGTGTTTTTTTGATGATTTTAGATTCTTTAGGAATAGGTTCAAGTGTTGATGCTTGTAAATTTAATGATTCCGG
TGCAGATACCTTAGGACATATAGCAGAAAAATGCTTTTTCAATGAAGCAAATGTACAACGAAGAGGTTCTTTATATATTC
CTAATTTGATTAAATTAGGAATAGTCAAATCATATCAATCTTCTACAGGAAAATATTTATTAGGGTTCAATCAAAAAGAA
GATGCTAATATTATTGCTAGTTATGGTTACGCTAGCGAACTTTCTTCTGGAAAAGATACTACTTCTGGACATTGGGAAAT
TGCTGGAGCCCCTTTTTTAAAGGATTGGTATTACTTTAAAGAGAAAGATAATTCCTTTCCTTCATCATTAATTAATAAGA
TAATAACAAAATTAAAATTACCTGGTATTCTTGGAAATTGTCATGCATCAGGTACAGAAATAATAAAAATTTTAGGTGAA
GAACATATTAAAACAGGCAAACCTATTTTTTATACCTCATGTGATTCTGTATTTCAAATCGCATGCCATGAAATTAAATT
CGGTTTATCAAATTTATACAAAATTTGTGAAAATATTCGTGAAATACTTGATCAAAATAAATATCAAGTAGCGCGTGTTA
TAGCTAGACCTTTTATTGGAACTAATAAATCAAACTTTAATAGAACTGGAAATAGACGCGATATTTCAATGAAACCCCTC
TCTATTACCTTTATGGAAAAATTAATACAAGAGAAACAAGGTAAAGTAATTGCAATAGGAAAAATTTCAGATATTTATGC
AGGAGTTGGAATAAGTAAAAATATTAAATCTACTGGTTTATATGAATTATGCCATACTACTATTCATCAGATGAAATCAG
CAAAAAATAATACTGTTATATTCACTAATTTTGTAGATTTTGATTCTGTTTGGGGTCATCGTCGTGACGTTTCAGGATAT
GCTAAAGGATTAGAATTTTTTGATAGTAAATTATCTGAAATGATTGATTTAGTTAAAGAAGGAGACTTATTTATTTTAAC
TGCAGATCATGGATGTGATCCTACTTGGAAAGGAACAGATCATACTAGAGAAAACGTTCCTATATTAATATATTCTCCAG
GTGAAGAAATAAAATTTCTAGGTCATCGAGATACTTTTTCTGATATAGGACAAACCATTGCAAAATACTTTTCATTATCT
GATATGAAATATGGAAAAAGTATGTTTTAA

Upstream 100 bases:

>100_bases
ATAAAGCTAATTTAGCTGTAATAAAAAATATTTATAATAATATTTTTTTTGAAAAAACAAGAGAACAATAAATATATTTT
ATTAATTTTAGGTATTTATA

Downstream 100 bases:

>100_bases
AAAAATTATTTATGAAAATAAGGAAAAAAATTAGTGCCAACTCTTCATATTAAAAGTGAAAAAAACGCTTTTTCAAATAT
AGTCCTTATGCCTGGTGATC

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MKRVFLMILDSLGIGSSVDACKFNDSGADTLGHIAEKCFFNEANVQRRGSLYIPNLIKLGIVKSYQSSTGKYLLGFNQKE
DANIIASYGYASELSSGKDTTSGHWEIAGAPFLKDWYYFKEKDNSFPSSLINKIITKLKLPGILGNCHASGTEIIKILGE
EHIKTGKPIFYTSCDSVFQIACHEIKFGLSNLYKICENIREILDQNKYQVARVIARPFIGTNKSNFNRTGNRRDISMKPL
SITFMEKLIQEKQGKVIAIGKISDIYAGVGISKNIKSTGLYELCHTTIHQMKSAKNNTVIFTNFVDFDSVWGHRRDVSGY
AKGLEFFDSKLSEMIDLVKEGDLFILTADHGCDPTWKGTDHTRENVPILIYSPGEEIKFLGHRDTFSDIGQTIAKYFSLS
DMKYGKSMF

Sequences:

>Translated_409_residues
MKRVFLMILDSLGIGSSVDACKFNDSGADTLGHIAEKCFFNEANVQRRGSLYIPNLIKLGIVKSYQSSTGKYLLGFNQKE
DANIIASYGYASELSSGKDTTSGHWEIAGAPFLKDWYYFKEKDNSFPSSLINKIITKLKLPGILGNCHASGTEIIKILGE
EHIKTGKPIFYTSCDSVFQIACHEIKFGLSNLYKICENIREILDQNKYQVARVIARPFIGTNKSNFNRTGNRRDISMKPL
SITFMEKLIQEKQGKVIAIGKISDIYAGVGISKNIKSTGLYELCHTTIHQMKSAKNNTVIFTNFVDFDSVWGHRRDVSGY
AKGLEFFDSKLSEMIDLVKEGDLFILTADHGCDPTWKGTDHTRENVPILIYSPGEEIKFLGHRDTFSDIGQTIAKYFSLS
DMKYGKSMF
>Mature_409_residues
MKRVFLMILDSLGIGSSVDACKFNDSGADTLGHIAEKCFFNEANVQRRGSLYIPNLIKLGIVKSYQSSTGKYLLGFNQKE
DANIIASYGYASELSSGKDTTSGHWEIAGAPFLKDWYYFKEKDNSFPSSLINKIITKLKLPGILGNCHASGTEIIKILGE
EHIKTGKPIFYTSCDSVFQIACHEIKFGLSNLYKICENIREILDQNKYQVARVIARPFIGTNKSNFNRTGNRRDISMKPL
SITFMEKLIQEKQGKVIAIGKISDIYAGVGISKNIKSTGLYELCHTTIHQMKSAKNNTVIFTNFVDFDSVWGHRRDVSGY
AKGLEFFDSKLSEMIDLVKEGDLFILTADHGCDPTWKGTDHTRENVPILIYSPGEEIKFLGHRDTFSDIGQTIAKYFSLS
DMKYGKSMF

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=409, Percent_Identity=58.679706601467, Blast_Score=531, Evalue=1e-152,
Organism=Escherichia coli, GI1789781, Length=431, Percent_Identity=24.1299303944316, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_BUCAP (Q8K936)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660854.1
- ProteinModelPortal:   Q8K936
- SMR:   Q8K936
- EnsemblBacteria:   EBBUCT00000000111
- GeneID:   1005653
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg522
- GeneTree:   EBGT00050000008105
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- ProtClustDB:   PRK05362
- BioCyc:   BAPH198804:BUSG522-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 45880; Mature: 45880

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVFLMILDSLGIGSSVDACKFNDSGADTLGHIAEKCFFNEANVQRRGSLYIPNLIKLG
CCEEEEEEHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
IVKSYQSSTGKYLLGFNQKEDANIIASYGYASELSSGKDTTSGHWEIAGAPFLKDWYYFK
HHHHHHCCCCCEEEECCCCCCCCEEEECCCHHHHCCCCCCCCCCEEECCCCHHHHHHHHH
EKDNSFPSSLINKIITKLKLPGILGNCHASGTEIIKILGEEHIKTGKPIFYTSCDSVFQI
CCCCCCHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHH
ACHEIKFGLSNLYKICENIREILDQNKYQVARVIARPFIGTNKSNFNRTGNRRDISMKPL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCC
SITFMEKLIQEKQGKVIAIGKISDIYAGVGISKNIKSTGLYELCHTTIHQMKSAKNNTVI
HHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
FTNFVDFDSVWGHRRDVSGYAKGLEFFDSKLSEMIDLVKEGDLFILTADHGCDPTWKGTD
EEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
HTRENVPILIYSPGEEIKFLGHRDTFSDIGQTIAKYFSLSDMKYGKSMF
CCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKRVFLMILDSLGIGSSVDACKFNDSGADTLGHIAEKCFFNEANVQRRGSLYIPNLIKLG
CCEEEEEEHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
IVKSYQSSTGKYLLGFNQKEDANIIASYGYASELSSGKDTTSGHWEIAGAPFLKDWYYFK
HHHHHHCCCCCEEEECCCCCCCCEEEECCCHHHHCCCCCCCCCCEEECCCCHHHHHHHHH
EKDNSFPSSLINKIITKLKLPGILGNCHASGTEIIKILGEEHIKTGKPIFYTSCDSVFQI
CCCCCCHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHH
ACHEIKFGLSNLYKICENIREILDQNKYQVARVIARPFIGTNKSNFNRTGNRRDISMKPL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCC
SITFMEKLIQEKQGKVIAIGKISDIYAGVGISKNIKSTGLYELCHTTIHQMKSAKNNTVI
HHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
FTNFVDFDSVWGHRRDVSGYAKGLEFFDSKLSEMIDLVKEGDLFILTADHGCDPTWKGTD
EEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
HTRENVPILIYSPGEEIKFLGHRDTFSDIGQTIAKYFSLSDMKYGKSMF
CCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12089438