| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is cysJ [H]
Identifier: 77748682
GI number: 77748682
Start: 3452482
End: 3454224
Strand: Direct
Name: cysJ [H]
Synonym: XAC2948
Alternate gene names: 77748682
Gene position: 3452482-3454224 (Clockwise)
Preceding gene: 21243674
Following gene: 21243679
Centisome position: 66.71
GC content: 67.81
Gene sequence:
>1743_bases ATGAGCAACACCACCTCACGCGTGTGGCTGGGCAACGGGCTGGCTCTGCTGGCGCTTGCGGTCATCGTCGGCTGGCTGGC CGGCCTGCATGAGGGCGCATGGTGGAGCCCACCCACGCCGCATCGCTGGCAACTGGCAGCGCTCGGCCTGGCAATGTATC TGGGCCTGTGCGCGGTCGTACTGCTGCGTGCCCGCAAGCGTGTCGGCGCACAACGCGCAGACGCCAGCGGCGTGTTGATC ATCTGGGCAAGCCAGACCGGATTTGCGCGTGAGCTGGCGCAACGCAGCGTTGCCGCGCTGCAATCGGCCGGCGTCGGCGC GCATGCGCTGCCGATCGAAGCCGTCGATAGCGGTCAACTCGCACGCGTGCCGCGGCTGCTGTGCATCGTCAGCACCACCG GCGAAGGCGATGCGCCCGACCATGCGCAGGCCGCCGAGCGCGCCTGGCGTGCCGACCACGCGCAGGATCTGACGGCGGTG CAGTACGCAGTGCTGGCGCTTGGCGACCGTGGTTACGCGCACTACTGCGCGTTCGGCCGACGCCTCGACGATCGCCTGCA GGCGCGCGGCGCCACTCGCCTGTTCGAGCGCATCGAGGTCGATAACGCTGACCCCAACGCCCTGCAGCACTGGCAACGCC GTCTGGCGGAACTGGCGCCCGCACTGGCGACGCAACCCGACTGGAGCCTGCCCACCTACACCACCTGGCAGCTACGCGAA CGTGTCCACGTCAATCCCGGCAGTGCGGGTGCGCCGATTTACCGACTGCGCCTGACGCCATGCGATGGCGCGTTGCCGCA GTGGAGCGCAGGCGATATCGCGGAGATCGCACCGCGTCATGCCCCGGATGCGGTCGAGTCCTGGCTGCGGCGTAACCACT ACGATGGCGCGCAGCAGATCGACGGCCGCCCCCTGCGCGACTGGCTCGGCGGCGCGCAACTTCCCGTCGATACCGGTGCC GCTCTCGGTATCGATGTGGGTGCCGGTGCCAGCCCCGATGCAGAAGCGGAAGCAGAAGCCGGAGTCAAAAGCGACCGAGG TGTGGGTACGAATACAGATGCGACTACAGGCGGAGCTAGAACTGCAGGCGACAGTTCCACAATGGACGCAGAAGCAATGG TGCGCCGCCTGGCCCCCCTGCCCCATCGCGACTATTCGCTCGCATCCATTCCCGAGGAAGGCCATGCAGAACTGCTGGTA CGCGAGCATCGGCACGCCGACGGCAGCCTGGGGCTGGGTAGCGGCTGGCTCTGCGTCCATGCACCGATCGGCGCAGCCAT CGCGCTGCGCTTGCGCAGCAACCCCGGCTTCCACCCACCCGCACCCGACCAGCCGATGCTGCTGATCGGCAATGGCACCG GCATCGCCGGTCTGCGCGCGCATCTGCGTGCACGCATCGCAGCCGGCGCGCGGCGCAACTGGCTGCTGTTCGGCGAACGC AATGCCGCGCACGACGCGCTGTATGCCGACGAGCTGCAGCAGTGGCATCAGGACGGCTGGATCGAGCGCTTGGATCTTGT CTACTCGCGCGATCAACCACAGCGACCGCATTACGTCCAACACGCGCTGGCGGCCGCCGCCGACCGCCTGCGTCATTGGA TCGACCAAGATGCCTGCATCTACGTCTGCGGCAGTCTGCGCGGCATGGCACCCGAACTCGACCGCACGCTGGATTGCATC CTCGGAGCCGATGTCAGACAGGAACTGCTGGGCAGCGGGCGCTATCGCCGCGACGTGTATTGA
Upstream 100 bases:
>100_bases ATGCGCGCAAGGCGGAACTGGCCGTGCGATTCCTGGCACGCAAGGACGGCATCCTGCTCGAATCGATGAGCCCGGCATTC GAACGCCACCTGTCCGCGTC
Downstream 100 bases:
>100_bases CCCATCGCACGCGGCACCGCCAAAAGCGCTCAATAAAGCGATTACGCAGGTACCCGCAGCGCGTCTGCTGCTGAAATCCG CAACATCCCTGCTTGCGGTG
Product: sulfite reductase
Products: NA
Alternate protein names: SiR-FP [H]
Number of amino acids: Translated: 580; Mature: 579
Protein sequence:
>580_residues MSNTTSRVWLGNGLALLALAVIVGWLAGLHEGAWWSPPTPHRWQLAALGLAMYLGLCAVVLLRARKRVGAQRADASGVLI IWASQTGFARELAQRSVAALQSAGVGAHALPIEAVDSGQLARVPRLLCIVSTTGEGDAPDHAQAAERAWRADHAQDLTAV QYAVLALGDRGYAHYCAFGRRLDDRLQARGATRLFERIEVDNADPNALQHWQRRLAELAPALATQPDWSLPTYTTWQLRE RVHVNPGSAGAPIYRLRLTPCDGALPQWSAGDIAEIAPRHAPDAVESWLRRNHYDGAQQIDGRPLRDWLGGAQLPVDTGA ALGIDVGAGASPDAEAEAEAGVKSDRGVGTNTDATTGGARTAGDSSTMDAEAMVRRLAPLPHRDYSLASIPEEGHAELLV REHRHADGSLGLGSGWLCVHAPIGAAIALRLRSNPGFHPPAPDQPMLLIGNGTGIAGLRAHLRARIAAGARRNWLLFGER NAAHDALYADELQQWHQDGWIERLDLVYSRDQPQRPHYVQHALAAAADRLRHWIDQDACIYVCGSLRGMAPELDRTLDCI LGADVRQELLGSGRYRRDVY
Sequences:
>Translated_580_residues MSNTTSRVWLGNGLALLALAVIVGWLAGLHEGAWWSPPTPHRWQLAALGLAMYLGLCAVVLLRARKRVGAQRADASGVLI IWASQTGFARELAQRSVAALQSAGVGAHALPIEAVDSGQLARVPRLLCIVSTTGEGDAPDHAQAAERAWRADHAQDLTAV QYAVLALGDRGYAHYCAFGRRLDDRLQARGATRLFERIEVDNADPNALQHWQRRLAELAPALATQPDWSLPTYTTWQLRE RVHVNPGSAGAPIYRLRLTPCDGALPQWSAGDIAEIAPRHAPDAVESWLRRNHYDGAQQIDGRPLRDWLGGAQLPVDTGA ALGIDVGAGASPDAEAEAEAGVKSDRGVGTNTDATTGGARTAGDSSTMDAEAMVRRLAPLPHRDYSLASIPEEGHAELLV REHRHADGSLGLGSGWLCVHAPIGAAIALRLRSNPGFHPPAPDQPMLLIGNGTGIAGLRAHLRARIAAGARRNWLLFGER NAAHDALYADELQQWHQDGWIERLDLVYSRDQPQRPHYVQHALAAAADRLRHWIDQDACIYVCGSLRGMAPELDRTLDCI LGADVRQELLGSGRYRRDVY >Mature_579_residues SNTTSRVWLGNGLALLALAVIVGWLAGLHEGAWWSPPTPHRWQLAALGLAMYLGLCAVVLLRARKRVGAQRADASGVLII WASQTGFARELAQRSVAALQSAGVGAHALPIEAVDSGQLARVPRLLCIVSTTGEGDAPDHAQAAERAWRADHAQDLTAVQ YAVLALGDRGYAHYCAFGRRLDDRLQARGATRLFERIEVDNADPNALQHWQRRLAELAPALATQPDWSLPTYTTWQLRER VHVNPGSAGAPIYRLRLTPCDGALPQWSAGDIAEIAPRHAPDAVESWLRRNHYDGAQQIDGRPLRDWLGGAQLPVDTGAA LGIDVGAGASPDAEAEAEAGVKSDRGVGTNTDATTGGARTAGDSSTMDAEAMVRRLAPLPHRDYSLASIPEEGHAELLVR EHRHADGSLGLGSGWLCVHAPIGAAIALRLRSNPGFHPPAPDQPMLLIGNGTGIAGLRAHLRARIAAGARRNWLLFGERN AAHDALYADELQQWHQDGWIERLDLVYSRDQPQRPHYVQHALAAAADRLRHWIDQDACIYVCGSLRGMAPELDRTLDCIL GADVRQELLGSGRYRRDVY
Specific function: Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow f
COG id: COG0369
COG function: function code P; Sulfite reductase, alpha subunit (flavoprotein)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 flavodoxin-like domain [H]
Homologues:
Organism=Homo sapiens, GI127139033, Length=229, Percent_Identity=31.0043668122271, Blast_Score=88, Evalue=3e-17, Organism=Homo sapiens, GI24041029, Length=241, Percent_Identity=30.2904564315353, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI40254422, Length=225, Percent_Identity=30.6666666666667, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI221316709, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI7657393, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=4e-11, Organism=Escherichia coli, GI1789123, Length=545, Percent_Identity=28.6238532110092, Blast_Score=168, Evalue=7e-43, Organism=Caenorhabditis elegans, GI17566446, Length=204, Percent_Identity=30.3921568627451, Blast_Score=78, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6321143, Length=234, Percent_Identity=26.4957264957265, Blast_Score=77, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6321832, Length=220, Percent_Identity=28.6363636363636, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI78706872, Length=239, Percent_Identity=31.3807531380753, Blast_Score=82, Evalue=7e-16, Organism=Drosophila melanogaster, GI24583543, Length=239, Percent_Identity=31.3807531380753, Blast_Score=82, Evalue=7e-16, Organism=Drosophila melanogaster, GI78706876, Length=239, Percent_Identity=31.3807531380753, Blast_Score=82, Evalue=7e-16, Organism=Drosophila melanogaster, GI17137192, Length=206, Percent_Identity=27.6699029126214, Blast_Score=76, Evalue=8e-14, Organism=Drosophila melanogaster, GI24582192, Length=206, Percent_Identity=27.6699029126214, Blast_Score=75, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010199 - InterPro: IPR003097 - InterPro: IPR017927 - InterPro: IPR001094 - InterPro: IPR008254 - InterPro: IPR001709 - InterPro: IPR023173 - InterPro: IPR001433 - InterPro: IPR017938 [H]
Pfam domain/function: PF00667 FAD_binding_1; PF00258 Flavodoxin_1; PF00175 NAD_binding_1 [H]
EC number: =1.8.1.2 [H]
Molecular weight: Translated: 62815; Mature: 62684
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: PS50902 FLAVODOXIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNTTSRVWLGNGLALLALAVIVGWLAGLHEGAWWSPPTPHRWQLAALGLAMYLGLCAVV CCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LLRARKRVGAQRADASGVLIIWASQTGFARELAQRSVAALQSAGVGAHALPIEAVDSGQL HHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCH ARVPRLLCIVSTTGEGDAPDHAQAAERAWRADHAQDLTAVQYAVLALGDRGYAHYCAFGR HHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH RLDDRLQARGATRLFERIEVDNADPNALQHWQRRLAELAPALATQPDWSLPTYTTWQLRE HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH RVHVNPGSAGAPIYRLRLTPCDGALPQWSAGDIAEIAPRHAPDAVESWLRRNHYDGAQQI HEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCHHHC DGRPLRDWLGGAQLPVDTGAALGIDVGAGASPDAEAEAEAGVKSDRGVGTNTDATTGGAR CCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC TAGDSSTMDAEAMVRRLAPLPHRDYSLASIPEEGHAELLVREHRHADGSLGLGSGWLCVH CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEE APIGAAIALRLRSNPGFHPPAPDQPMLLIGNGTGIAGLRAHLRARIAAGARRNWLLFGER CCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECC NAAHDALYADELQQWHQDGWIERLDLVYSRDQPQRPHYVQHALAAAADRLRHWIDQDACI CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE YVCGSLRGMAPELDRTLDCILGADVRQELLGSGRYRRDVY EEEHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCC >Mature Secondary Structure SNTTSRVWLGNGLALLALAVIVGWLAGLHEGAWWSPPTPHRWQLAALGLAMYLGLCAVV CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LLRARKRVGAQRADASGVLIIWASQTGFARELAQRSVAALQSAGVGAHALPIEAVDSGQL HHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCH ARVPRLLCIVSTTGEGDAPDHAQAAERAWRADHAQDLTAVQYAVLALGDRGYAHYCAFGR HHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH RLDDRLQARGATRLFERIEVDNADPNALQHWQRRLAELAPALATQPDWSLPTYTTWQLRE HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH RVHVNPGSAGAPIYRLRLTPCDGALPQWSAGDIAEIAPRHAPDAVESWLRRNHYDGAQQI HEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCHHHC DGRPLRDWLGGAQLPVDTGAALGIDVGAGASPDAEAEAEAGVKSDRGVGTNTDATTGGAR CCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC TAGDSSTMDAEAMVRRLAPLPHRDYSLASIPEEGHAELLVREHRHADGSLGLGSGWLCVH CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEE APIGAAIALRLRSNPGFHPPAPDQPMLLIGNGTGIAGLRAHLRARIAAGARRNWLLFGER CCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECC NAAHDALYADELQQWHQDGWIERLDLVYSRDQPQRPHYVQHALAAAADRLRHWIDQDACI CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE YVCGSLRGMAPELDRTLDCILGADVRQELLGSGRYRRDVY EEEHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA