| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is 77748569
Identifier: 77748569
GI number: 77748569
Start: 1380860
End: 1383004
Strand: Direct
Name: 77748569
Synonym: XAC1208
Alternate gene names: NA
Gene position: 1380860-1383004 (Clockwise)
Preceding gene: 21241961
Following gene: 21241969
Centisome position: 26.68
GC content: 62.1
Gene sequence:
>2145_bases GTGCCTAAGATTGAATCGACCAAGCAGGCCCCACCGGATCCCGCGCAATTGATTCAAACTGCACCGACACCATCGGGCTC GGGATCAGCCGCAAGCACGTCTGCCGACAGTGCGGCGCCCTCAGCGCAACTCGGCGGGCTTTCCATCAGGCCGCGGCGGC TGGGCCGGGCTTCCAGAGCCAATCTCCCAGCGGCATCCTCTACCAACGCACAGGACGTCATGGCGGCGCTCTTTGCCGCG CCGTCAGTTCCGCAAGGGCCAGATCCTTTCGAAGTATTGAGCAAGGCCTCGTCCAGGCTGAAACGCTTCAACGACCTGGC ACAAAACATAGTGCCGACACAGCCAACGGATATCAGAGCCCTGGAAGCAAGACTCCGGTCCGGAACGTCTGCGATCGAAT CCGCTCGACAGGCCTTGCAGGCGCTGGCCGAGTTGAGTATCCAAAAACGCATGCCGGTCGACAATATCGAAGAACACGAG AATTTCCTGGTGACGCATCTCGCCGTAGCCGCATGCCTGCACCACGACTCATGCAAGGAGATGATCGATCAGAAAGTGGC TACCGAATTGGGCCATGTGCGGACCCAAAGGGTCGAGATGGTGGTGTTTTCCCCTGAGGCCCTCCGTCTGCAGCAACCGG AACCATGGCTTGCGTTACGCGGGCATCTTCTGAATGCCCTTGCCGCGATGGAGGACGTTTGCCAGCGCATCAAATCGCCG ATGACGCGTCAGGGGCCGCGCGACTCGCTCAAGGTCAATCTTCCGGTCGTCAGGGCGATGATGGGATCGTGCCATGAACG GATGCAGACCGTCCGCGGAATGCTCGTCGAAATACATTCAAGGAGACTTGCCGATGAGGCCTGCAATTGCGGCCTGCCCC AGGTGCTTGACGGTCTGAGGGAGCTCGAAGAAGTCGAGGATCTTGGCCACGCTGAGGTGGGTGAAGCGCTCAGGCATGTG ATCCAGGTCCATATCGAACGCCTGTCCTCAACCGAGCACTCACTGACGCCGCAGATGCTGTCCATGTACAAGCAAGTGCT TGTCGAATACGCCGAGCTGCGTGGCCGAGCGGCGACGCAGCTGTGTATGGATGCCGCCGCGCTCATCGAGGACGGGGGGC GTGCCACAGATCATCTATGGCCAACGATGCTCGATCTTGCCCAGGCACTTGCCGACCAACGCCAGGCAATTCTTGACGTG TGTGATTTCGCCATCCAGGACAGGCAGCTGATTGGCGCAGCAGCGGCTACGCCCGAGCAAGCACCGGCGTCGAGCACACC AAGCGTGCCGACAACGACAACGACAGCAGGCAAATCGAGCAGGTCACACAAGGCAGGCACGCGTACGCCTGATGCTTCCA GCTCGGCGGCAGCGCCCGCCGCGCGGCGGGTCATCGATGAGCGCAGCGCAGCGCAAAAGCAGGCCGACGAGATACTGAGA GGCACGCGCTTGGAGTCGTTGCCAGTGGCAGAACTCGGGGGCGATTTCATCGCGCTCGCCAAGCGCCTCGGCAAGGACAC CACCGACGTAGAGCGCCTGATCGGCGACTCCAGGCATGACGCGGCGACGGCCTTCGATTTTGCCAGGACCTGCATGCAGG GCTGGTTCGGATCGAGTGAGCGTCTGCTGCAGCTCAAAAGCAAGCTCCGTGCAGGAGACGGGCGCATCGAACAACTCGAT ACGCGGCTGCGGCTTCTCCAGAGGATCGAGGATGCTTTCGAACGGCGCGAAGCCGATGCGCTCAAGACCGATCCGCAGCC ACGGGCGCCGCATCTGGAGCGCCTGTTGGCGATGAATGGAGTGGCACGCGTCACGGCGCCGAAGCGCCTTCGCTCGGAGG GCGACCGTGGCAGGCTATTCGAGGTGCGTATCGAGCACGCGCCGCAGTCAAATGGAGACATTCCCGCGCCCTGGTTCGTC CACGTACATACCGAAAAACCGGTAACCCCCGCCAGGCTGCGCGCGCTCCATTACAAGGACTTGGCCGCCGTCCACCTGAA GACGGCCAGGGAAGTCAACCTGGGCGCACGCTGGGAGGAGATGATGCGCGCCCTCGGAAATACCGAGGCCAAGGTGCACC GGGCAACCATCGGCTCCAAGCTGCTTGGCCAGCTTTGGGCGGCTGGCTCTGGCGGGCAACAATAA
Upstream 100 bases:
>100_bases CTGGGGTGCCGCACCACCACGTTCCACGCACATTCCCGGGCGGGGGGACACTCGGACGCCGTGCGCGAGCAAATTGAATG GCGATATCGGAGGATGCACC
Downstream 100 bases:
>100_bases TCACGACGCTCGGTCGGTCCTTACCAAGGAAGGAGATCGCCGGAATACATGCCCTCAGCGCACGGATCACTCAATGTGAG TGGCCAGTTGCAGCAGGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: Type III Effector; Outer Protein P
Number of amino acids: Translated: 714; Mature: 713
Protein sequence:
>714_residues MPKIESTKQAPPDPAQLIQTAPTPSGSGSAASTSADSAAPSAQLGGLSIRPRRLGRASRANLPAASSTNAQDVMAALFAA PSVPQGPDPFEVLSKASSRLKRFNDLAQNIVPTQPTDIRALEARLRSGTSAIESARQALQALAELSIQKRMPVDNIEEHE NFLVTHLAVAACLHHDSCKEMIDQKVATELGHVRTQRVEMVVFSPEALRLQQPEPWLALRGHLLNALAAMEDVCQRIKSP MTRQGPRDSLKVNLPVVRAMMGSCHERMQTVRGMLVEIHSRRLADEACNCGLPQVLDGLRELEEVEDLGHAEVGEALRHV IQVHIERLSSTEHSLTPQMLSMYKQVLVEYAELRGRAATQLCMDAAALIEDGGRATDHLWPTMLDLAQALADQRQAILDV CDFAIQDRQLIGAAAATPEQAPASSTPSVPTTTTTAGKSSRSHKAGTRTPDASSSAAAPAARRVIDERSAAQKQADEILR GTRLESLPVAELGGDFIALAKRLGKDTTDVERLIGDSRHDAATAFDFARTCMQGWFGSSERLLQLKSKLRAGDGRIEQLD TRLRLLQRIEDAFERREADALKTDPQPRAPHLERLLAMNGVARVTAPKRLRSEGDRGRLFEVRIEHAPQSNGDIPAPWFV HVHTEKPVTPARLRALHYKDLAAVHLKTAREVNLGARWEEMMRALGNTEAKVHRATIGSKLLGQLWAAGSGGQQ
Sequences:
>Translated_714_residues MPKIESTKQAPPDPAQLIQTAPTPSGSGSAASTSADSAAPSAQLGGLSIRPRRLGRASRANLPAASSTNAQDVMAALFAA PSVPQGPDPFEVLSKASSRLKRFNDLAQNIVPTQPTDIRALEARLRSGTSAIESARQALQALAELSIQKRMPVDNIEEHE NFLVTHLAVAACLHHDSCKEMIDQKVATELGHVRTQRVEMVVFSPEALRLQQPEPWLALRGHLLNALAAMEDVCQRIKSP MTRQGPRDSLKVNLPVVRAMMGSCHERMQTVRGMLVEIHSRRLADEACNCGLPQVLDGLRELEEVEDLGHAEVGEALRHV IQVHIERLSSTEHSLTPQMLSMYKQVLVEYAELRGRAATQLCMDAAALIEDGGRATDHLWPTMLDLAQALADQRQAILDV CDFAIQDRQLIGAAAATPEQAPASSTPSVPTTTTTAGKSSRSHKAGTRTPDASSSAAAPAARRVIDERSAAQKQADEILR GTRLESLPVAELGGDFIALAKRLGKDTTDVERLIGDSRHDAATAFDFARTCMQGWFGSSERLLQLKSKLRAGDGRIEQLD TRLRLLQRIEDAFERREADALKTDPQPRAPHLERLLAMNGVARVTAPKRLRSEGDRGRLFEVRIEHAPQSNGDIPAPWFV HVHTEKPVTPARLRALHYKDLAAVHLKTAREVNLGARWEEMMRALGNTEAKVHRATIGSKLLGQLWAAGSGGQQ >Mature_713_residues PKIESTKQAPPDPAQLIQTAPTPSGSGSAASTSADSAAPSAQLGGLSIRPRRLGRASRANLPAASSTNAQDVMAALFAAP SVPQGPDPFEVLSKASSRLKRFNDLAQNIVPTQPTDIRALEARLRSGTSAIESARQALQALAELSIQKRMPVDNIEEHEN FLVTHLAVAACLHHDSCKEMIDQKVATELGHVRTQRVEMVVFSPEALRLQQPEPWLALRGHLLNALAAMEDVCQRIKSPM TRQGPRDSLKVNLPVVRAMMGSCHERMQTVRGMLVEIHSRRLADEACNCGLPQVLDGLRELEEVEDLGHAEVGEALRHVI QVHIERLSSTEHSLTPQMLSMYKQVLVEYAELRGRAATQLCMDAAALIEDGGRATDHLWPTMLDLAQALADQRQAILDVC DFAIQDRQLIGAAAATPEQAPASSTPSVPTTTTTAGKSSRSHKAGTRTPDASSSAAAPAARRVIDERSAAQKQADEILRG TRLESLPVAELGGDFIALAKRLGKDTTDVERLIGDSRHDAATAFDFARTCMQGWFGSSERLLQLKSKLRAGDGRIEQLDT RLRLLQRIEDAFERREADALKTDPQPRAPHLERLLAMNGVARVTAPKRLRSEGDRGRLFEVRIEHAPQSNGDIPAPWFVH VHTEKPVTPARLRALHYKDLAAVHLKTAREVNLGARWEEMMRALGNTEAKVHRATIGSKLLGQLWAAGSGGQQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77789; Mature: 77658
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKIESTKQAPPDPAQLIQTAPTPSGSGSAASTSADSAAPSAQLGGLSIRPRRLGRASRA CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHC NLPAASSTNAQDVMAALFAAPSVPQGPDPFEVLSKASSRLKRFNDLAQNIVPTQPTDIRA CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH LEARLRSGTSAIESARQALQALAELSIQKRMPVDNIEEHENFLVTHLAVAACLHHDSCKE HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MIDQKVATELGHVRTQRVEMVVFSPEALRLQQPEPWLALRGHLLNALAAMEDVCQRIKSP HHHHHHHHHHHHHHHHHEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC MTRQGPRDSLKVNLPVVRAMMGSCHERMQTVRGMLVEIHSRRLADEACNCGLPQVLDGLR CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH ELEEVEDLGHAEVGEALRHVIQVHIERLSSTEHSLTPQMLSMYKQVLVEYAELRGRAATQ HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHCHHHHH LCMDAAALIEDGGRATDHLWPTMLDLAQALADQRQAILDVCDFAIQDRQLIGAAAATPEQ HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC APASSTPSVPTTTTTAGKSSRSHKAGTRTPDASSSAAAPAARRVIDERSAAQKQADEILR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH GTRLESLPVAELGGDFIALAKRLGKDTTDVERLIGDSRHDAATAFDFARTCMQGWFGSSE CCCCCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHH RLLQLKSKLRAGDGRIEQLDTRLRLLQRIEDAFERREADALKTDPQPRAPHLERLLAMNG HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC VARVTAPKRLRSEGDRGRLFEVRIEHAPQSNGDIPAPWFVHVHTEKPVTPARLRALHYKD CHHHCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH LAAVHLKTAREVNLGARWEEMMRALGNTEAKVHRATIGSKLLGQLWAAGSGGQQ HHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PKIESTKQAPPDPAQLIQTAPTPSGSGSAASTSADSAAPSAQLGGLSIRPRRLGRASRA CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHC NLPAASSTNAQDVMAALFAAPSVPQGPDPFEVLSKASSRLKRFNDLAQNIVPTQPTDIRA CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH LEARLRSGTSAIESARQALQALAELSIQKRMPVDNIEEHENFLVTHLAVAACLHHDSCKE HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MIDQKVATELGHVRTQRVEMVVFSPEALRLQQPEPWLALRGHLLNALAAMEDVCQRIKSP HHHHHHHHHHHHHHHHHEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC MTRQGPRDSLKVNLPVVRAMMGSCHERMQTVRGMLVEIHSRRLADEACNCGLPQVLDGLR CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH ELEEVEDLGHAEVGEALRHVIQVHIERLSSTEHSLTPQMLSMYKQVLVEYAELRGRAATQ HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHCHHHHH LCMDAAALIEDGGRATDHLWPTMLDLAQALADQRQAILDVCDFAIQDRQLIGAAAATPEQ HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC APASSTPSVPTTTTTAGKSSRSHKAGTRTPDASSSAAAPAARRVIDERSAAQKQADEILR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH GTRLESLPVAELGGDFIALAKRLGKDTTDVERLIGDSRHDAATAFDFARTCMQGWFGSSE CCCCCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHH RLLQLKSKLRAGDGRIEQLDTRLRLLQRIEDAFERREADALKTDPQPRAPHLERLLAMNG HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC VARVTAPKRLRSEGDRGRLFEVRIEHAPQSNGDIPAPWFVHVHTEKPVTPARLRALHYKD CHHHCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH LAAVHLKTAREVNLGARWEEMMRALGNTEAKVHRATIGSKLLGQLWAAGSGGQQ HHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA