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The map label for this gene is rhaS [H]

Identifier: 21241961

GI number: 21241961

Start: 1379465

End: 1380145

Strand: Direct

Name: rhaS [H]

Synonym: XAC1207

Alternate gene names: 21241961

Gene position: 1379465-1380145 (Clockwise)

Preceding gene: 77748568

Following gene: 77748569

Centisome position: 26.65

GC content: 61.23

Gene sequence:

>681_bases
GTGCCGGACGTGTTGTTCTTCGTCAAGGATCGCGAGGGCCGCTACACCCACGTCAACCAGACCATGCTGCGGCGGCTGGG
GCTGAAGTCGCGCAAGGACCTGATCGGCAAGCGTGTGGCCGAGGTCTATCCCAGTGGCCTGGGCGCCAACTACGCCAATC
AGGACGAGCAGGTGCTGGCCGGCGAGGTGATCGACAACCTGCTGGAGCTCCACCTGTTCGCCAACCGTGAGCCTGGCTGG
TGCCTGACCTGCAAGCGGCCGTTGGTGGTGAACGGCAAGGTGCAGGGCATCATCGGCATCTCGCGCGATCTGGGCCCGCA
GGATGGCCACGAATCGCAATACGAAAAGCTGCGACTTGCGCTGGCGTATCTCAACGCCAATTACGCGCAGAACGTCCGCA
TGCAGGCTCTGGTGGAGATCACCGGATTTTCCATGTCCAAGCTGCAACGCTCGTTCCGCAAGGTATTCCAGCTCACGCCG
CAGCAAGTATTGGCCAAGCTGCGCCTGCAGATGGCGATGCATCTGCTGCACGGAAACAAGAGCCTCACCGAAATCGGCCA
CGCTTGCGGCTTCAGCGATCAAAGCGCCTTCGCGCGGCAATTCAAGCAAGCGGTGGGTATGACGCCGCGCGAATATCGTG
CGTTGGCGAATGCGCAGCAGTTTTCGACCGAAACAGTGTAG

Upstream 100 bases:

>100_bases
GGTTTGATGCGCCTTTCCCGGTCTCGAGCACCTTGCCCTGCATGAACCCTTTCGCATGAAGAGCATCGATCCTGCCGATC
TTGAAGCGTTGTTCGATGCC

Downstream 100 bases:

>100_bases
AGGTCGGGGCGATCTCAACGTGCATGCGCACGACATGGGGTGCGCCTGAATTCTCTTGAACTGCCCGGTGAGGTGTTTTT
CCAACAAGCGCCCTGTGGCG

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MPDVLFFVKDREGRYTHVNQTMLRRLGLKSRKDLIGKRVAEVYPSGLGANYANQDEQVLAGEVIDNLLELHLFANREPGW
CLTCKRPLVVNGKVQGIIGISRDLGPQDGHESQYEKLRLALAYLNANYAQNVRMQALVEITGFSMSKLQRSFRKVFQLTP
QQVLAKLRLQMAMHLLHGNKSLTEIGHACGFSDQSAFARQFKQAVGMTPREYRALANAQQFSTETV

Sequences:

>Translated_226_residues
MPDVLFFVKDREGRYTHVNQTMLRRLGLKSRKDLIGKRVAEVYPSGLGANYANQDEQVLAGEVIDNLLELHLFANREPGW
CLTCKRPLVVNGKVQGIIGISRDLGPQDGHESQYEKLRLALAYLNANYAQNVRMQALVEITGFSMSKLQRSFRKVFQLTP
QQVLAKLRLQMAMHLLHGNKSLTEIGHACGFSDQSAFARQFKQAVGMTPREYRALANAQQFSTETV
>Mature_225_residues
PDVLFFVKDREGRYTHVNQTMLRRLGLKSRKDLIGKRVAEVYPSGLGANYANQDEQVLAGEVIDNLLELHLFANREPGWC
LTCKRPLVVNGKVQGIIGISRDLGPQDGHESQYEKLRLALAYLNANYAQNVRMQALVEITGFSMSKLQRSFRKVFQLTPQ
QVLAKLRLQMAMHLLHGNKSLTEIGHACGFSDQSAFARQFKQAVGMTPREYRALANAQQFSTETV

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=108, Percent_Identity=36.1111111111111, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 25509; Mature: 25378

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDVLFFVKDREGRYTHVNQTMLRRLGLKSRKDLIGKRVAEVYPSGLGANYANQDEQVLA
CCCEEEEEECCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
GEVIDNLLELHLFANREPGWCLTCKRPLVVNGKVQGIIGISRDLGPQDGHESQYEKLRLA
HHHHHHHHHHHHHCCCCCCEEEEECCCEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHH
LAYLNANYAQNVRMQALVEITGFSMSKLQRSFRKVFQLTPQQVLAKLRLQMAMHLLHGNK
HHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
SLTEIGHACGFSDQSAFARQFKQAVGMTPREYRALANAQQFSTETV
HHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PDVLFFVKDREGRYTHVNQTMLRRLGLKSRKDLIGKRVAEVYPSGLGANYANQDEQVLA
CCEEEEEECCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
GEVIDNLLELHLFANREPGWCLTCKRPLVVNGKVQGIIGISRDLGPQDGHESQYEKLRLA
HHHHHHHHHHHHHCCCCCCEEEEECCCEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHH
LAYLNANYAQNVRMQALVEITGFSMSKLQRSFRKVFQLTPQQVLAKLRLQMAMHLLHGNK
HHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
SLTEIGHACGFSDQSAFARQFKQAVGMTPREYRALANAQQFSTETV
HHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA