| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yghA [H]
Identifier: 21244464
GI number: 21244464
Start: 4413297
End: 4414388
Strand: Direct
Name: yghA [H]
Synonym: XAC3738
Alternate gene names: 21244464
Gene position: 4413297-4414388 (Clockwise)
Preceding gene: 21244461
Following gene: 21244465
Centisome position: 85.27
GC content: 62.55
Gene sequence:
>1092_bases ATGACCTCCTGGCGATGCGCGCAGTATCGAGCGTCCTCGGCAAAACCGCATGAAGTTTGCGTGCAGCCGCGCTGTTCTGC ATGCCACCGCATTGCCGGTGTACTGCCTGCCGCGCACAGGGCGCGATCGGCAACACACGCCATGCGCACATCGTTTAGCC CGGATATTTACGTTTGCGTCACCACACTGGCGTGCAACCAACAAAGTCACTGCCAGGAGACCACGATGCCCGTACCCAAC TATCCACGCCCGCCCTTCAAGCCACAGAAGCAAAGCTTTCCCGGCCGCACCGAGAAGATGGATCCGCGCCCGGACCATGG CGAAGACAGCTACGTAGGCCACGGCCAGTTGAAAGGCAAGCGTGCACTGATTACCGGTGGCGACAGCGGCATCGGCGCTG CGGTTGCCATTGCCTATGCACGCGAAGGCGCGGATGTGGCGATTGCCTTTCTTCCCGATGAGCAGGAAGACGCCGCGCGC ATTGGCGCCTTGATCGAAAAGGCCGGCGTCAAGGCGCTGCTGGTGGGATGCGACATCAGCGACCCGAGCCAGGCAGCGGC CTTGGTCGACAAAGTCAACAGCACCCTGGGCGGCCTGGATATTCTGGTCAATAACGCCGGTTACCAGAAGTACTTCGAGA CCTTCGAGGACATCACCCTGGACGAATGGCGCAAGACCTTCGACACCAACGTGCATGCGGCCTTCAATCTGGTACGCCTG TCGGTGCCGCTCATGACCGACGGCGGCTCCATCATCAACACCGCCTCGGTGCAGTCGAAGAAACCTACGCCCAACATTCT GCCCTACGCCGCGACCAAGGGCGCGCTGGCCAACCTCACCATCGGCCTGGCCGGTGTGCTGGCGGAGAAGAACATCCGCG TCAACGCGGTGCTGCCGGGCCCGATCTGGACACCCTTCATTCCCTCCGGCATGGACGAAGAATCGGTGGAAAACTTCGGC GGGCAGACCCCCATGGGGCGCCCGGGTCAGCCGGTCGAGCTGGCATCGGCGTATGTCATGCTTGCGGCCGACACGGCCAG TTACACCTCGGGCACCTTGCTGACCATCTCTGGCGGCGCGGTCACGCTGTAA
Upstream 100 bases:
>100_bases TCGTTGTACGCGTGCAATCCGGCATAGACCTGGCAACCGATGAAGAAGATAGTCAACGCAAGCAGACACAACGACAGCCC ATTACGACGCAAGAACATGG
Downstream 100 bases:
>100_bases CGCTGTCGCATTGTTGCCGGGCCCGCGTCGCTGATCGAGCGACGCGGGCTTTTTATTGGGCCACTTCTTTTGTGGATTCT CGGCGCGCATTAGCGCACGC
Product: oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 363; Mature: 362
Protein sequence:
>363_residues MTSWRCAQYRASSAKPHEVCVQPRCSACHRIAGVLPAAHRARSATHAMRTSFSPDIYVCVTTLACNQQSHCQETTMPVPN YPRPPFKPQKQSFPGRTEKMDPRPDHGEDSYVGHGQLKGKRALITGGDSGIGAAVAIAYAREGADVAIAFLPDEQEDAAR IGALIEKAGVKALLVGCDISDPSQAAALVDKVNSTLGGLDILVNNAGYQKYFETFEDITLDEWRKTFDTNVHAAFNLVRL SVPLMTDGGSIINTASVQSKKPTPNILPYAATKGALANLTIGLAGVLAEKNIRVNAVLPGPIWTPFIPSGMDEESVENFG GQTPMGRPGQPVELASAYVMLAADTASYTSGTLLTISGGAVTL
Sequences:
>Translated_363_residues MTSWRCAQYRASSAKPHEVCVQPRCSACHRIAGVLPAAHRARSATHAMRTSFSPDIYVCVTTLACNQQSHCQETTMPVPN YPRPPFKPQKQSFPGRTEKMDPRPDHGEDSYVGHGQLKGKRALITGGDSGIGAAVAIAYAREGADVAIAFLPDEQEDAAR IGALIEKAGVKALLVGCDISDPSQAAALVDKVNSTLGGLDILVNNAGYQKYFETFEDITLDEWRKTFDTNVHAAFNLVRL SVPLMTDGGSIINTASVQSKKPTPNILPYAATKGALANLTIGLAGVLAEKNIRVNAVLPGPIWTPFIPSGMDEESVENFG GQTPMGRPGQPVELASAYVMLAADTASYTSGTLLTISGGAVTL >Mature_362_residues TSWRCAQYRASSAKPHEVCVQPRCSACHRIAGVLPAAHRARSATHAMRTSFSPDIYVCVTTLACNQQSHCQETTMPVPNY PRPPFKPQKQSFPGRTEKMDPRPDHGEDSYVGHGQLKGKRALITGGDSGIGAAVAIAYAREGADVAIAFLPDEQEDAARI GALIEKAGVKALLVGCDISDPSQAAALVDKVNSTLGGLDILVNNAGYQKYFETFEDITLDEWRKTFDTNVHAAFNLVRLS VPLMTDGGSIINTASVQSKKPTPNILPYAATKGALANLTIGLAGVLAEKNIRVNAVLPGPIWTPFIPSGMDEESVENFGG QTPMGRPGQPVELASAYVMLAADTASYTSGTLLTISGGAVTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=33.739837398374, Blast_Score=123, Evalue=3e-28, Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=31.0043668122271, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=31.3008130081301, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI19923817, Length=266, Percent_Identity=29.6992481203008, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=30.1204819277108, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=30.8300395256917, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=31.2252964426877, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=32.9896907216495, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI10190704, Length=258, Percent_Identity=29.4573643410853, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI40254992, Length=238, Percent_Identity=30.2521008403361, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=27.734375, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI31542939, Length=212, Percent_Identity=31.6037735849057, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=27.8225806451613, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI302344755, Length=103, Percent_Identity=40.7766990291262, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI109715829, Length=210, Percent_Identity=30.952380952381, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI83715985, Length=256, Percent_Identity=26.171875, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI4503301, Length=205, Percent_Identity=23.9024390243902, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1789378, Length=292, Percent_Identity=48.6301369863014, Blast_Score=265, Evalue=3e-72, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=38.1147540983607, Blast_Score=138, Evalue=7e-34, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=38.1147540983607, Blast_Score=135, Evalue=4e-33, Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=37.8486055776892, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=33.203125, Blast_Score=115, Evalue=6e-27, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=31.3253012048193, Blast_Score=114, Evalue=7e-27, Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=33.3333333333333, Blast_Score=111, Evalue=9e-26, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=32.9268292682927, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=31.4516129032258, Blast_Score=99, Evalue=6e-22, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=29.1497975708502, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=28.2945736434109, Blast_Score=97, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=34.4, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=32.520325203252, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=34.0080971659919, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=31.6981132075472, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=30.0395256916996, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=29.718875502008, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=31.8007662835249, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17559104, Length=258, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=31.9230769230769, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=32.6996197718631, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=32.1969696969697, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17538182, Length=205, Percent_Identity=33.6585365853659, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=31.25, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=30.7392996108949, Blast_Score=92, Evalue=5e-19, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=31.1538461538462, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=32.319391634981, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=30.3149606299213, Blast_Score=89, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=29.5454545454545, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=29.9242424242424, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17561272, Length=261, Percent_Identity=29.8850574712644, Blast_Score=81, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=32.3308270676692, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17565030, Length=256, Percent_Identity=32.421875, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560332, Length=258, Percent_Identity=31.3953488372093, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17551412, Length=258, Percent_Identity=31.0077519379845, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=29.9180327868852, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=29.0566037735849, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=32.0754716981132, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=30.9160305343511, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71982365, Length=248, Percent_Identity=26.2096774193548, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17564282, Length=202, Percent_Identity=31.6831683168317, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17567345, Length=216, Percent_Identity=27.3148148148148, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17558628, Length=254, Percent_Identity=28.740157480315, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI193203117, Length=243, Percent_Identity=27.1604938271605, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=218, Percent_Identity=26.605504587156, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=217, Percent_Identity=27.1889400921659, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=35.3413654618474, Blast_Score=122, Evalue=6e-28, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=33.4661354581673, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=34.3873517786561, Blast_Score=118, Evalue=7e-27, Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=31.1740890688259, Blast_Score=102, Evalue=6e-22, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=32.1285140562249, Blast_Score=101, Evalue=1e-21, Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=33.6, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=31.8548387096774, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI17737361, Length=233, Percent_Identity=29.6137339055794, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI24639444, Length=261, Percent_Identity=31.4176245210728, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI161076933, Length=203, Percent_Identity=30.0492610837438, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24584748, Length=203, Percent_Identity=30.0492610837438, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI21357673, Length=201, Percent_Identity=28.3582089552239, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24580925, Length=205, Percent_Identity=30.2439024390244, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI281364892, Length=193, Percent_Identity=30.0518134715026, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24640492, Length=197, Percent_Identity=28.9340101522843, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 38539; Mature: 38408
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSWRCAQYRASSAKPHEVCVQPRCSACHRIAGVLPAAHRARSATHAMRTSFSPDIYVCV CCCCCCHHHHCCCCCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE TTLACNQQSHCQETTMPVPNYPRPPFKPQKQSFPGRTEKMDPRPDHGEDSYVGHGQLKGK EEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RALITGGDSGIGAAVAIAYAREGADVAIAFLPDEQEDAARIGALIEKAGVKALLVGCDIS EEEEECCCCCCCHHEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCC DPSQAAALVDKVNSTLGGLDILVNNAGYQKYFETFEDITLDEWRKTFDTNVHAAFNLVRL CHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHCCCHHHHEEEEEE SVPLMTDGGSIINTASVQSKKPTPNILPYAATKGALANLTIGLAGVLAEKNIRVNAVLPG EEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCEEEEEEECC PIWTPFIPSGMDEESVENFGGQTPMGRPGQPVELASAYVMLAADTASYTSGTLLTISGGA CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHCEEEEEEECCCCCCCCEEEEECCCE VTL EEC >Mature Secondary Structure TSWRCAQYRASSAKPHEVCVQPRCSACHRIAGVLPAAHRARSATHAMRTSFSPDIYVCV CCCCCHHHHCCCCCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE TTLACNQQSHCQETTMPVPNYPRPPFKPQKQSFPGRTEKMDPRPDHGEDSYVGHGQLKGK EEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RALITGGDSGIGAAVAIAYAREGADVAIAFLPDEQEDAARIGALIEKAGVKALLVGCDIS EEEEECCCCCCCHHEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCC DPSQAAALVDKVNSTLGGLDILVNNAGYQKYFETFEDITLDEWRKTFDTNVHAAFNLVRL CHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHCCCHHHHEEEEEE SVPLMTDGGSIINTASVQSKKPTPNILPYAATKGALANLTIGLAGVLAEKNIRVNAVLPG EEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCEEEEEEECC PIWTPFIPSGMDEESVENFGGQTPMGRPGQPVELASAYVMLAADTASYTSGTLLTISGGA CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHCEEEEEEECCCCCCCCEEEEECCCE VTL EEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]