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The map label for this gene is ydhO [H]

Identifier: 21243481

GI number: 21243481

Start: 3226187

End: 3226840

Strand: Direct

Name: ydhO [H]

Synonym: XAC2753

Alternate gene names: 21243481

Gene position: 3226187-3226840 (Clockwise)

Preceding gene: 21243474

Following gene: 21243482

Centisome position: 62.34

GC content: 66.82

Gene sequence:

>654_bases
ATGCCTGGCTCTGAATGGGCTGCCCGGTGGCAGACGGTTGAGGACGGCTTGTCGGCCGCCGGGTGCGCCGCCATCATGGC
GACCTTTCGAACCGCCCATTATCCCGGCTCCATGCATATCACGCCAGTTTTCGCCGCCAGCGCCCGACGCGCCGCGGCCA
GCCTGTTGCTGGGCCTGCTGCTCCTGGGGGGCTGTTCGTCGCATGCGCCAGTGCGGCGCCCGGCCGCGCCACCACCGGCT
GCGCGCGTATGGCCGCAGGTGCCGCCGGCCGACCCGGCCGCCGCCAACAACATCCTGATGCGCGCGCTGGGGCTGGTGGG
CACCCCGTACCGGTTTGGCGGCAATACGCCTCAGACCGGCTTCGACTGCAGCGGGCTGGTCACCTATGTCTACCAAGACG
TATTGGCCCTGGCGCTACCGCGCACCTCGCGCGAACTGGCCGCGATCCAGGGCCCGCGCATCCCGCCCGAGCGACTTGCC
ACCGGCGATCTGGTGTTTTTCGGCGCTGGAGGCAACGTGACCCATGTTGGCATTTATGTCGGTGAAGGCCGCTTCGTGCA
TGCCCCTACCACCGGCGGTACGGTCCGCTTGGATTTTCTGGATGGAGCTTACTGGCGTGACCATTATTCAGGTTCAAAGC
GGGTTTTGCACTAA

Upstream 100 bases:

>100_bases
GATCGCCAACGGGTCACGCTCCTTGGAGCTCTCGATCGGCTCCTGGCCGATCTCCGAAACGGTGTAATGGAAGCGGACGA
CGCTGTCTTTTTCGATCTTC

Downstream 100 bases:

>100_bases
AATGTGATGAACATCACAAGTCATAAAACGGAAAGTTAACTTTTTTTGAACGTAACGATTCTTTCACCAGGGCATCATCT
CGCATCGACAGCAGAACTGT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MPGSEWAARWQTVEDGLSAAGCAAIMATFRTAHYPGSMHITPVFAASARRAAASLLLGLLLLGGCSSHAPVRRPAAPPPA
ARVWPQVPPADPAAANNILMRALGLVGTPYRFGGNTPQTGFDCSGLVTYVYQDVLALALPRTSRELAAIQGPRIPPERLA
TGDLVFFGAGGNVTHVGIYVGEGRFVHAPTTGGTVRLDFLDGAYWRDHYSGSKRVLH

Sequences:

>Translated_217_residues
MPGSEWAARWQTVEDGLSAAGCAAIMATFRTAHYPGSMHITPVFAASARRAAASLLLGLLLLGGCSSHAPVRRPAAPPPA
ARVWPQVPPADPAAANNILMRALGLVGTPYRFGGNTPQTGFDCSGLVTYVYQDVLALALPRTSRELAAIQGPRIPPERLA
TGDLVFFGAGGNVTHVGIYVGEGRFVHAPTTGGTVRLDFLDGAYWRDHYSGSKRVLH
>Mature_216_residues
PGSEWAARWQTVEDGLSAAGCAAIMATFRTAHYPGSMHITPVFAASARRAAASLLLGLLLLGGCSSHAPVRRPAAPPPAA
RVWPQVPPADPAAANNILMRALGLVGTPYRFGGNTPQTGFDCSGLVTYVYQDVLALALPRTSRELAAIQGPRIPPERLAT
GDLVFFGAGGNVTHVGIYVGEGRFVHAPTTGGTVRLDFLDGAYWRDHYSGSKRVLH

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=173, Percent_Identity=38.728323699422, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1786421, Length=114, Percent_Identity=41.2280701754386, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1788001, Length=154, Percent_Identity=40.2597402597403, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788501, Length=110, Percent_Identity=40.9090909090909, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 22884; Mature: 22753

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGSEWAARWQTVEDGLSAAGCAAIMATFRTAHYPGSMHITPVFAASARRAAASLLLGLL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHH
LLGGCSSHAPVRRPAAPPPAARVWPQVPPADPAAANNILMRALGLVGTPYRFGGNTPQTG
HHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
FDCSGLVTYVYQDVLALALPRTSRELAAIQGPRIPPERLATGDLVFFGAGGNVTHVGIYV
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHCCCCCEEEECCCCCEEEEEEEE
GEGRFVHAPTTGGTVRLDFLDGAYWRDHYSGSKRVLH
ECCEEEECCCCCCEEEEEECCCCHHHHCCCCCCCCCC
>Mature Secondary Structure 
PGSEWAARWQTVEDGLSAAGCAAIMATFRTAHYPGSMHITPVFAASARRAAASLLLGLL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHH
LLGGCSSHAPVRRPAAPPPAARVWPQVPPADPAAANNILMRALGLVGTPYRFGGNTPQTG
HHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
FDCSGLVTYVYQDVLALALPRTSRELAAIQGPRIPPERLATGDLVFFGAGGNVTHVGIYV
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHCCCCCEEEECCCCCEEEEEEEE
GEGRFVHAPTTGGTVRLDFLDGAYWRDHYSGSKRVLH
ECCEEEECCCCCCEEEEEECCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]