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The map label for this gene is ydhO [H]

Identifier: 21243482

GI number: 21243482

Start: 3226950

End: 3227699

Strand: Direct

Name: ydhO [H]

Synonym: XAC2755

Alternate gene names: 21243482

Gene position: 3226950-3227699 (Clockwise)

Preceding gene: 21243481

Following gene: 21243486

Centisome position: 62.35

GC content: 66.93

Gene sequence:

>750_bases
GTGACGAACGACGAACAGATCAAACCTGGCGCCGCACCGCTTCCGCCCCGGAAACCGCTCCGCCTGCTATGCGCCACCGC
GTTGTTGATTGCAGCACTTCCTGCATTCGCGCAGACCGCCAGTAGCACGCCATCCGCTCCGCAGACGACCACGCCGGACA
GCGCCGTCGCCGCCGAGAAGGCCGCAACCCGCAGCCGCGCCGACGCCGCTGCCACCGCAACACTGGCCGCCCTGCTTCCG
CACCTGGCTGCCAACGACGCCATTCCGCTGATGGACCGCTCGGCGATGTTTGCTGGCGATCTCAGCCGCCTGCTCGCTAA
TTACGACGTGTCGCAGAGCGCAGCCAATGCTGCTCAGAACGCCGTGGCCGATAGCCGCGTGCAGGTGATCCTGCAGCGCG
CCATGGCCCTGCTCGGCACTCCGTACGTCTGGGGCGGCGAATCCACCGAAGGGTTCGACTGCAGCGGCCTGGTCGGCTAT
GTATTCAAGACTGCGCTCGGCATCGACCTGCCGCGCGTCTCGCGCGACATCGCCCGCGACGAATCGGCCGAACTGATCAA
GGACCCGAGCGCGCTGAAAGCTGGCGACCTGGTGTTCTTCGGCAAGCGTGGCCGTATCGACCATGTCGGCCTGGTGGTCG
GCGACGGCAAGTTCCTGCACGCGCCCAGCCGCGGCAAGGACGTGCGCGTGGATTCGCTGGCCAGCGGCTACTGGAGCGAA
AAGTTCATCCAGGCGCGCCGGGTGCTGTAA

Upstream 100 bases:

>100_bases
AACATCACAAGTCATAAAACGGAAAGTTAACTTTTTTTGAACGTAACGATTCTTTCACCAGGGCATCATCTCGCATCGAC
AGCAGAACTGTGATTCCCGC

Downstream 100 bases:

>100_bases
CGCTCGGTTGCTTTCGACTCATTCGAAGAGGGCCGCGACGATCTCGCGGCCTTTTGTTGCGCGGAACCGGGCCGCGACGT
CCATGTGCGACCGCGCAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MTNDEQIKPGAAPLPPRKPLRLLCATALLIAALPAFAQTASSTPSAPQTTTPDSAVAAEKAATRSRADAAATATLAALLP
HLAANDAIPLMDRSAMFAGDLSRLLANYDVSQSAANAAQNAVADSRVQVILQRAMALLGTPYVWGGESTEGFDCSGLVGY
VFKTALGIDLPRVSRDIARDESAELIKDPSALKAGDLVFFGKRGRIDHVGLVVGDGKFLHAPSRGKDVRVDSLASGYWSE
KFIQARRVL

Sequences:

>Translated_249_residues
MTNDEQIKPGAAPLPPRKPLRLLCATALLIAALPAFAQTASSTPSAPQTTTPDSAVAAEKAATRSRADAAATATLAALLP
HLAANDAIPLMDRSAMFAGDLSRLLANYDVSQSAANAAQNAVADSRVQVILQRAMALLGTPYVWGGESTEGFDCSGLVGY
VFKTALGIDLPRVSRDIARDESAELIKDPSALKAGDLVFFGKRGRIDHVGLVVGDGKFLHAPSRGKDVRVDSLASGYWSE
KFIQARRVL
>Mature_248_residues
TNDEQIKPGAAPLPPRKPLRLLCATALLIAALPAFAQTASSTPSAPQTTTPDSAVAAEKAATRSRADAAATATLAALLPH
LAANDAIPLMDRSAMFAGDLSRLLANYDVSQSAANAAQNAVADSRVQVILQRAMALLGTPYVWGGESTEGFDCSGLVGYV
FKTALGIDLPRVSRDIARDESAELIKDPSALKAGDLVFFGKRGRIDHVGLVVGDGKFLHAPSRGKDVRVDSLASGYWSEK
FIQARRVL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=220, Percent_Identity=33.6363636363636, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1786421, Length=126, Percent_Identity=38.8888888888889, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1788501, Length=180, Percent_Identity=33.8888888888889, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788001, Length=114, Percent_Identity=39.4736842105263, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 26167; Mature: 26036

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNDEQIKPGAAPLPPRKPLRLLCATALLIAALPAFAQTASSTPSAPQTTTPDSAVAAEK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
AATRSRADAAATATLAALLPHLAANDAIPLMDRSAMFAGDLSRLLANYDVSQSAANAAQN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
AVADSRVQVILQRAMALLGTPYVWGGESTEGFDCSGLVGYVFKTALGIDLPRVSRDIARD
HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCC
ESAELIKDPSALKAGDLVFFGKRGRIDHVGLVVGDGKFLHAPSRGKDVRVDSLASGYWSE
HHHHHHCCCCCCCCCCEEEECCCCCCEEEEEEEECCEEEECCCCCCCCCHHHHHHHHHHH
KFIQARRVL
HHHHHHHCC
>Mature Secondary Structure 
TNDEQIKPGAAPLPPRKPLRLLCATALLIAALPAFAQTASSTPSAPQTTTPDSAVAAEK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
AATRSRADAAATATLAALLPHLAANDAIPLMDRSAMFAGDLSRLLANYDVSQSAANAAQN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
AVADSRVQVILQRAMALLGTPYVWGGESTEGFDCSGLVGYVFKTALGIDLPRVSRDIARD
HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCC
ESAELIKDPSALKAGDLVFFGKRGRIDHVGLVVGDGKFLHAPSRGKDVRVDSLASGYWSE
HHHHHHCCCCCCCCCCEEEECCCCCCEEEEEEEECCEEEECCCCCCCCCHHHHHHHHHHH
KFIQARRVL
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]