| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is pepO [H]
Identifier: 21243474
GI number: 21243474
Start: 3217753
End: 3219768
Strand: Direct
Name: pepO [H]
Synonym: XAC2747
Alternate gene names: 21243474
Gene position: 3217753-3219768 (Clockwise)
Preceding gene: 21243473
Following gene: 21243481
Centisome position: 62.17
GC content: 67.06
Gene sequence:
>2016_bases ATGCCCACCATTCGTCCGCTTGCCCTCGCTCTTGGCTTCAGCCTGATCTCGCTGCTGTCCGCCCCCGACGCCGACGCCGC TCGCAAGAAGAAGGCCGCGGCGCCCAAGGCTCCGGCCGTCTCGGCGGCCTGCACCAATTTCTACGACTACGCCAACGCCA GCTGGCTCAAGGCCAACCCCGTGCCGCAGGCCGGCGCCGTCACCGCGCTGGGTCAATTGTCCGAGCGCGCCCTGCAGCAG CAGCGCGAGTTGCTCGACGCATCGATGAAGTCCCCGCAGGGCAACGTGCAGAAGCTGCTTGGCGATTTCTGGGCCAGCGG CCTGGACGAGGCGGCTGTCGAAAAGGACGGCTCCAACCCGATCGCCCCCCTGCTCTCGCGCATCGACGCGATCAAGAAGG CCAAGGATGTGCCCGCTTCCATCGCCGCGTTGCATCAGGTCGGTATTCCGGTCGGCTTCAATTTCGGCCCGGACGTGGAC CTGAAGGCGCTCGATCGCCATATCGGCTACTTCATGCAGGGCGGCATGGGCCTGCCCGACCCGGCCTTCTACACCCGCAC CGACGCCGACACCCAGGCGCTGATGGGCCGCTACCGCGCCTACGTCAAGCAGATCCTGGCGCTCACCGGCACCGCCGCCG ACAAGCTCGACGCCGACGCCGCCTCCGTGCTGCAGATCGAAACCGCGCTGGCGCGTAGCGCGCAGTCGGTGCAGGGCATC AACAACCCGTTCAACAACTACGCACCGATCGCCACCAAGGAACTGGGCAAGCAGTACAAGAACCTGCGCCTGGCCGACTT TCTGGAAGCGCAAGGCGTCAAGGACGACCTGGTGTCGATGGCCGACCCGGCCATGTTCAAGCAACTCGACAGCATGATCG TCAGCATCAAGCCGGACCAGTGGAAGGCCTACCTGCGCTGGCGCGTGGGCGATGCGATGGCGCCGTACCTGTCCAAGAGC TTCCACGATGCCGAATACCAGTTCCGCGGCCGTCTGCTGCGTGGCGATGCGGTGCCGCCGCAGCGTTGGCAGCAGGTGCT GGACGCGATCAACGTGGCCGCCGGCCCGATGCTCGGCCGCGAATACGTGTCGCGTTATCTGAGCAGCGACACCCGTCGCC AGGCCGAAGCCATCGCCGACCAGGTGCGCGATGCGCAGCTGGCCGCGCTGGAGCGCACCGGTTGGGGCAACGGCGAGGTG GTGGCCGAAGCCAAGGCCAAGCTGGCTGCGATGAAGATCGAAGTCGGCGCGCCGCGACGCGACCTGGATTACACCGTGCA GCCGATGGGGCGCGGCAGCTTCGGCGGCAACATGCTGATCGCCTCGACCTGGCGCCACCGCGAAGAGATGAAGCGCATCG GCAAGGGCAACGCCGACCGTCGCTGGGACGTGCTGCCGCAACAGCCGGCGGTGGCCTACGACATCGCGCAGAACCGCCTG ATCGTCACTGCCGCCGTGTTGCAGGCGCCGGTGTTGACCACCGGCGGAACGCAGGCGGCGCAGTACGGTGCGTACGGTGC GCTGGTCGCACACGAGATCACCCGTGCGATCGATGCCAAGGGCTCGCTGGTCGATGCCAAGGGTGAATTGCGCAGCTGGT GGACGCCGGCCGAAAAGGCGAGCTGGACGATGCTGACCAACAAGGTCGCCACGCAGTTCTCGGCCTACCCGTATCCGGGC GTGCCCAACGCCAAGGTCAATGGTGCGCAGACCGCCGAAGAGAACCTGGCCGATCTGGCCGGCGTCGAATTGGCCTGGCA GGCATTCAGCAAGGCGCAGCCGGCAGCCACCGAGGCCGACAAGCAGGCCTTCTTCACTGCCTGGGCCGGGCTGTGGGCGC AGCAGTTGTCGCCCAACGAAGCGGTACAGCGCGCAAGCGCCGACATCCGCGCACCGGGCCAGTGGCGCACCAACGGCCCG CTTTCGAACCTGCCCGAGTTCGGTGCAACGTTCAGCTGCAAGGCCGGCCAGCCGATGCAGCGCGTGGATGCGGACCAGAT CAAAGTCTGGCGCTGA
Upstream 100 bases:
>100_bases AAGCGGCCGGCAGCGAGCACGAACCGGCGCGCGCGCCTGCCTGCGCGGCACGCAGCCTTGCTAAACTCCGCCGACTTCAA TCTGGCCACCCTTCTTCTCG
Downstream 100 bases:
>100_bases TCCTCGCCGAGGTTAGGCCATCAAAAAAGAGCGCGGATCCCGCGCTCTTTCTTTGTCTGTGGCATTCGCGGGAAAGCGTG TCAGCTACGATCCGTGCTGG
Product: metallopeptidase
Products: NA
Alternate protein names: Endopeptidase O [H]
Number of amino acids: Translated: 671; Mature: 670
Protein sequence:
>671_residues MPTIRPLALALGFSLISLLSAPDADAARKKKAAAPKAPAVSAACTNFYDYANASWLKANPVPQAGAVTALGQLSERALQQ QRELLDASMKSPQGNVQKLLGDFWASGLDEAAVEKDGSNPIAPLLSRIDAIKKAKDVPASIAALHQVGIPVGFNFGPDVD LKALDRHIGYFMQGGMGLPDPAFYTRTDADTQALMGRYRAYVKQILALTGTAADKLDADAASVLQIETALARSAQSVQGI NNPFNNYAPIATKELGKQYKNLRLADFLEAQGVKDDLVSMADPAMFKQLDSMIVSIKPDQWKAYLRWRVGDAMAPYLSKS FHDAEYQFRGRLLRGDAVPPQRWQQVLDAINVAAGPMLGREYVSRYLSSDTRRQAEAIADQVRDAQLAALERTGWGNGEV VAEAKAKLAAMKIEVGAPRRDLDYTVQPMGRGSFGGNMLIASTWRHREEMKRIGKGNADRRWDVLPQQPAVAYDIAQNRL IVTAAVLQAPVLTTGGTQAAQYGAYGALVAHEITRAIDAKGSLVDAKGELRSWWTPAEKASWTMLTNKVATQFSAYPYPG VPNAKVNGAQTAEENLADLAGVELAWQAFSKAQPAATEADKQAFFTAWAGLWAQQLSPNEAVQRASADIRAPGQWRTNGP LSNLPEFGATFSCKAGQPMQRVDADQIKVWR
Sequences:
>Translated_671_residues MPTIRPLALALGFSLISLLSAPDADAARKKKAAAPKAPAVSAACTNFYDYANASWLKANPVPQAGAVTALGQLSERALQQ QRELLDASMKSPQGNVQKLLGDFWASGLDEAAVEKDGSNPIAPLLSRIDAIKKAKDVPASIAALHQVGIPVGFNFGPDVD LKALDRHIGYFMQGGMGLPDPAFYTRTDADTQALMGRYRAYVKQILALTGTAADKLDADAASVLQIETALARSAQSVQGI NNPFNNYAPIATKELGKQYKNLRLADFLEAQGVKDDLVSMADPAMFKQLDSMIVSIKPDQWKAYLRWRVGDAMAPYLSKS FHDAEYQFRGRLLRGDAVPPQRWQQVLDAINVAAGPMLGREYVSRYLSSDTRRQAEAIADQVRDAQLAALERTGWGNGEV VAEAKAKLAAMKIEVGAPRRDLDYTVQPMGRGSFGGNMLIASTWRHREEMKRIGKGNADRRWDVLPQQPAVAYDIAQNRL IVTAAVLQAPVLTTGGTQAAQYGAYGALVAHEITRAIDAKGSLVDAKGELRSWWTPAEKASWTMLTNKVATQFSAYPYPG VPNAKVNGAQTAEENLADLAGVELAWQAFSKAQPAATEADKQAFFTAWAGLWAQQLSPNEAVQRASADIRAPGQWRTNGP LSNLPEFGATFSCKAGQPMQRVDADQIKVWR >Mature_670_residues PTIRPLALALGFSLISLLSAPDADAARKKKAAAPKAPAVSAACTNFYDYANASWLKANPVPQAGAVTALGQLSERALQQQ RELLDASMKSPQGNVQKLLGDFWASGLDEAAVEKDGSNPIAPLLSRIDAIKKAKDVPASIAALHQVGIPVGFNFGPDVDL KALDRHIGYFMQGGMGLPDPAFYTRTDADTQALMGRYRAYVKQILALTGTAADKLDADAASVLQIETALARSAQSVQGIN NPFNNYAPIATKELGKQYKNLRLADFLEAQGVKDDLVSMADPAMFKQLDSMIVSIKPDQWKAYLRWRVGDAMAPYLSKSF HDAEYQFRGRLLRGDAVPPQRWQQVLDAINVAAGPMLGREYVSRYLSSDTRRQAEAIADQVRDAQLAALERTGWGNGEVV AEAKAKLAAMKIEVGAPRRDLDYTVQPMGRGSFGGNMLIASTWRHREEMKRIGKGNADRRWDVLPQQPAVAYDIAQNRLI VTAAVLQAPVLTTGGTQAAQYGAYGALVAHEITRAIDAKGSLVDAKGELRSWWTPAEKASWTMLTNKVATQFSAYPYPGV PNAKVNGAQTAEENLADLAGVELAWQAFSKAQPAATEADKQAFFTAWAGLWAQQLSPNEAVQRASADIRAPGQWRTNGPL SNLPEFGATFSCKAGQPMQRVDADQIKVWR
Specific function: Unknown
COG id: COG3590
COG function: function code O; Predicted metalloendopeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M13 family [H]
Homologues:
Organism=Homo sapiens, GI157426891, Length=669, Percent_Identity=25.5605381165919, Blast_Score=199, Evalue=7e-51, Organism=Homo sapiens, GI239049391, Length=677, Percent_Identity=22.4519940915805, Blast_Score=184, Evalue=3e-46, Organism=Homo sapiens, GI4503443, Length=664, Percent_Identity=23.644578313253, Blast_Score=181, Evalue=2e-45, Organism=Homo sapiens, GI164519136, Length=664, Percent_Identity=23.644578313253, Blast_Score=181, Evalue=2e-45, Organism=Homo sapiens, GI164519140, Length=664, Percent_Identity=23.644578313253, Blast_Score=181, Evalue=2e-45, Organism=Homo sapiens, GI164519138, Length=664, Percent_Identity=23.644578313253, Blast_Score=180, Evalue=3e-45, Organism=Homo sapiens, GI153945761, Length=649, Percent_Identity=23.4206471494607, Blast_Score=173, Evalue=5e-43, Organism=Homo sapiens, GI153945771, Length=651, Percent_Identity=23.3486943164363, Blast_Score=173, Evalue=5e-43, Organism=Homo sapiens, GI153945836, Length=649, Percent_Identity=23.4206471494607, Blast_Score=172, Evalue=7e-43, Organism=Homo sapiens, GI82617560, Length=649, Percent_Identity=23.4206471494607, Blast_Score=172, Evalue=9e-43, Organism=Homo sapiens, GI116256333, Length=722, Percent_Identity=20.7756232686981, Blast_Score=162, Evalue=1e-39, Organism=Homo sapiens, GI116256331, Length=722, Percent_Identity=20.7756232686981, Blast_Score=162, Evalue=1e-39, Organism=Homo sapiens, GI116256329, Length=722, Percent_Identity=20.7756232686981, Blast_Score=162, Evalue=1e-39, Organism=Homo sapiens, GI116256327, Length=722, Percent_Identity=20.7756232686981, Blast_Score=162, Evalue=1e-39, Organism=Homo sapiens, GI90403592, Length=678, Percent_Identity=23.1563421828909, Blast_Score=157, Evalue=4e-38, Organism=Homo sapiens, GI4557691, Length=662, Percent_Identity=19.9395770392749, Blast_Score=109, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17533333, Length=664, Percent_Identity=21.6867469879518, Blast_Score=151, Evalue=1e-36, Organism=Caenorhabditis elegans, GI25148650, Length=672, Percent_Identity=22.7678571428571, Blast_Score=151, Evalue=1e-36, Organism=Caenorhabditis elegans, GI71987442, Length=674, Percent_Identity=22.4035608308605, Blast_Score=147, Evalue=2e-35, Organism=Caenorhabditis elegans, GI86562497, Length=676, Percent_Identity=22.6331360946746, Blast_Score=145, Evalue=6e-35, Organism=Caenorhabditis elegans, GI17564342, Length=380, Percent_Identity=23.9473684210526, Blast_Score=129, Evalue=4e-30, Organism=Caenorhabditis elegans, GI32563993, Length=633, Percent_Identity=21.4849921011058, Blast_Score=128, Evalue=8e-30, Organism=Caenorhabditis elegans, GI17532485, Length=319, Percent_Identity=25.3918495297806, Blast_Score=102, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17533319, Length=495, Percent_Identity=20.8080808080808, Blast_Score=98, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71988640, Length=325, Percent_Identity=23.6923076923077, Blast_Score=86, Evalue=7e-17, Organism=Caenorhabditis elegans, GI71994787, Length=333, Percent_Identity=21.6216216216216, Blast_Score=83, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17534885, Length=199, Percent_Identity=25.1256281407035, Blast_Score=82, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17534401, Length=342, Percent_Identity=20.7602339181287, Blast_Score=80, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17570047, Length=247, Percent_Identity=28.3400809716599, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI24643425, Length=667, Percent_Identity=23.3883058470765, Blast_Score=210, Evalue=3e-54, Organism=Drosophila melanogaster, GI17737761, Length=669, Percent_Identity=21.8236173393124, Blast_Score=170, Evalue=3e-42, Organism=Drosophila melanogaster, GI24640050, Length=666, Percent_Identity=22.0720720720721, Blast_Score=159, Evalue=5e-39, Organism=Drosophila melanogaster, GI24640052, Length=666, Percent_Identity=22.0720720720721, Blast_Score=159, Evalue=5e-39, Organism=Drosophila melanogaster, GI45550777, Length=533, Percent_Identity=23.4521575984991, Blast_Score=152, Evalue=1e-36, Organism=Drosophila melanogaster, GI45551938, Length=533, Percent_Identity=23.4521575984991, Blast_Score=152, Evalue=1e-36, Organism=Drosophila melanogaster, GI221474862, Length=317, Percent_Identity=23.6593059936909, Blast_Score=106, Evalue=5e-23, Organism=Drosophila melanogaster, GI24650765, Length=393, Percent_Identity=22.64631043257, Blast_Score=105, Evalue=1e-22, Organism=Drosophila melanogaster, GI24650487, Length=220, Percent_Identity=29.0909090909091, Blast_Score=102, Evalue=7e-22, Organism=Drosophila melanogaster, GI24650889, Length=208, Percent_Identity=28.3653846153846, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI281362760, Length=204, Percent_Identity=28.921568627451, Blast_Score=90, Evalue=5e-18, Organism=Drosophila melanogaster, GI24650885, Length=203, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI21355943, Length=343, Percent_Identity=21.2827988338192, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24650883, Length=199, Percent_Identity=23.6180904522613, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000718 - InterPro: IPR018497 - InterPro: IPR008753 [H]
Pfam domain/function: PF01431 Peptidase_M13; PF05649 Peptidase_M13_N [H]
EC number: NA
Molecular weight: Translated: 72696; Mature: 72565
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTIRPLALALGFSLISLLSAPDADAARKKKAAAPKAPAVSAACTNFYDYANASWLKANP CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCC VPQAGAVTALGQLSERALQQQRELLDASMKSPQGNVQKLLGDFWASGLDEAAVEKDGSNP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCC IAPLLSRIDAIKKAKDVPASIAALHQVGIPVGFNFGPDVDLKALDRHIGYFMQGGMGLPD HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC PAFYTRTDADTQALMGRYRAYVKQILALTGTAADKLDADAASVLQIETALARSAQSVQGI CCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHC NNPFNNYAPIATKELGKQYKNLRLADFLEAQGVKDDLVSMADPAMFKQLDSMIVSIKPDQ CCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHEECCCHH WKAYLRWRVGDAMAPYLSKSFHDAEYQFRGRLLRGDAVPPQRWQQVLDAINVAAGPMLGR HHHHHHHHHCCHHHHHHHHHHCCCHHHHHCEEEECCCCCHHHHHHHHHHHHHHHCCHHHH EYVSRYLSSDTRRQAEAIADQVRDAQLAALERTGWGNGEVVAEAKAKLAAMKIEVGAPRR HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHEEEECCCCCC DLDYTVQPMGRGSFGGNMLIASTWRHREEMKRIGKGNADRRWDVLPQQPAVAYDIAQNRL CCCCEECCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCE IVTAAVLQAPVLTTGGTQAAQYGAYGALVAHEITRAIDAKGSLVDAKGELRSWWTPAEKA EEHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEECCCCHHHHCCCCCCCC SWTMLTNKVATQFSAYPYPGVPNAKVNGAQTAEENLADLAGVELAWQAFSKAQPAATEAD HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH KQAFFTAWAGLWAQQLSPNEAVQRASADIRAPGQWRTNGPLSNLPEFGATFSCKAGQPMQ HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCEEECCCCCCHH RVDADQIKVWR HCCCCHHEECC >Mature Secondary Structure PTIRPLALALGFSLISLLSAPDADAARKKKAAAPKAPAVSAACTNFYDYANASWLKANP CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCC VPQAGAVTALGQLSERALQQQRELLDASMKSPQGNVQKLLGDFWASGLDEAAVEKDGSNP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCC IAPLLSRIDAIKKAKDVPASIAALHQVGIPVGFNFGPDVDLKALDRHIGYFMQGGMGLPD HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC PAFYTRTDADTQALMGRYRAYVKQILALTGTAADKLDADAASVLQIETALARSAQSVQGI CCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHC NNPFNNYAPIATKELGKQYKNLRLADFLEAQGVKDDLVSMADPAMFKQLDSMIVSIKPDQ CCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHEECCCHH WKAYLRWRVGDAMAPYLSKSFHDAEYQFRGRLLRGDAVPPQRWQQVLDAINVAAGPMLGR HHHHHHHHHCCHHHHHHHHHHCCCHHHHHCEEEECCCCCHHHHHHHHHHHHHHHCCHHHH EYVSRYLSSDTRRQAEAIADQVRDAQLAALERTGWGNGEVVAEAKAKLAAMKIEVGAPRR HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHEEEECCCCCC DLDYTVQPMGRGSFGGNMLIASTWRHREEMKRIGKGNADRRWDVLPQQPAVAYDIAQNRL CCCCEECCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCE IVTAAVLQAPVLTTGGTQAAQYGAYGALVAHEITRAIDAKGSLVDAKGELRSWWTPAEKA EEHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEECCCCHHHHCCCCCCCC SWTMLTNKVATQFSAYPYPGVPNAKVNGAQTAEENLADLAGVELAWQAFSKAQPAATEAD HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH KQAFFTAWAGLWAQQLSPNEAVQRASADIRAPGQWRTNGPLSNLPEFGATFSCKAGQPMQ HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCEEECCCCCCHH RVDADQIKVWR HCCCCHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9726890 [H]