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The map label for this gene is scoP [H]

Identifier: 21243454

GI number: 21243454

Start: 3188685

End: 3189278

Strand: Direct

Name: scoP [H]

Synonym: XAC2727

Alternate gene names: 21243454

Gene position: 3188685-3189278 (Clockwise)

Preceding gene: 21243445

Following gene: 21243455

Centisome position: 61.61

GC content: 66.84

Gene sequence:

>594_bases
ATGTTGCTGGGCCAGAAGTTCCTTGGCGGCGCGCCCAGTTCGCCATGGCCACCCACCAAGACCATCACCTTTTATCCGCA
GCCGCGCCCGCTGCCGCAATTCAGCCTGCGCCAGTCCGACGGCACCCAACTGGTGCCCGGCGAGCTCAAGGGACATTGGA
CGCTGGTGTTTCTGGGCTTCACGTTCTGCCCCGATGTCTGCCCCACCACCTTGACCGATCTGGCGGTGGCGCAACAGCAA
TGGGAAGCCATTCCCGATGGCTTGCGCCCGCGCGTGCTGTTCGTGTCGGTGGACCCGCAGCGCGATCCGCCTGCGCGCCT
GGGCGAGTACGCGCATGCCTTCCACAAGGACACCCTGGCCGCCACTGCCGACGTGCCGGCGCTGGAGCGCTTCGCCACCG
CGCTGGGCTTCGTGTTCCAAAAGGTCCCTGGCAAGGGCTATGCGCAAAATCCCAACGACTACAGCATGGACCACTCGGCC
GGCATCGCCGTGCTCGATCCGCAGGGCCGCCTGGCCGGCCTGATCCGCCCCCCGCTCGACCCGAAGGCGATTGCCGCCGA
CCTCCAACAGCTGACCAAGGTAACCGCTCCGTGA

Upstream 100 bases:

>100_bases
GGTCGGATCGGTATCATGAGCGTCCGTTGCAGTGGAAACCGCCATGTTCAATCGCAATACCGGCATCGTGCTGCTGGTGG
CCCTGGCCGCTGGCCTGGGG

Downstream 100 bases:

>100_bases
GTCTTGTCACTTCCCTGACCTACGTGCTGCCGCACCGGCTGCTGTCGTCGCTGGCACGCGCGCTGGCCTATTCGCAGACA
CCGTCCACCAAGCAGTGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MLLGQKFLGGAPSSPWPPTKTITFYPQPRPLPQFSLRQSDGTQLVPGELKGHWTLVFLGFTFCPDVCPTTLTDLAVAQQQ
WEAIPDGLRPRVLFVSVDPQRDPPARLGEYAHAFHKDTLAATADVPALERFATALGFVFQKVPGKGYAQNPNDYSMDHSA
GIAVLDPQGRLAGLIRPPLDPKAIAADLQQLTKVTAP

Sequences:

>Translated_197_residues
MLLGQKFLGGAPSSPWPPTKTITFYPQPRPLPQFSLRQSDGTQLVPGELKGHWTLVFLGFTFCPDVCPTTLTDLAVAQQQ
WEAIPDGLRPRVLFVSVDPQRDPPARLGEYAHAFHKDTLAATADVPALERFATALGFVFQKVPGKGYAQNPNDYSMDHSA
GIAVLDPQGRLAGLIRPPLDPKAIAADLQQLTKVTAP
>Mature_197_residues
MLLGQKFLGGAPSSPWPPTKTITFYPQPRPLPQFSLRQSDGTQLVPGELKGHWTLVFLGFTFCPDVCPTTLTDLAVAQQQ
WEAIPDGLRPRVLFVSVDPQRDPPARLGEYAHAFHKDTLAATADVPALERFATALGFVFQKVPGKGYAQNPNDYSMDHSA
GIAVLDPQGRLAGLIRPPLDPKAIAADLQQLTKVTAP

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=137, Percent_Identity=32.1167883211679, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI281182722, Length=137, Percent_Identity=32.1167883211679, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI281182716, Length=137, Percent_Identity=32.1167883211679, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI153791313, Length=137, Percent_Identity=32.1167883211679, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI4759068, Length=141, Percent_Identity=29.0780141843972, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17531419, Length=139, Percent_Identity=29.4964028776978, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6319511, Length=173, Percent_Identity=27.1676300578035, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6319498, Length=165, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19920710, Length=161, Percent_Identity=26.7080745341615, Blast_Score=74, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21394; Mature: 21394

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLGQKFLGGAPSSPWPPTKTITFYPQPRPLPQFSLRQSDGTQLVPGELKGHWTLVFLGF
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEH
TFCPDVCPTTLTDLAVAQQQWEAIPDGLRPRVLFVSVDPQRDPPARLGEYAHAFHKDTLA
HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
ATADVPALERFATALGFVFQKVPGKGYAQNPNDYSMDHSAGIAVLDPQGRLAGLIRPPLD
HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCC
PKAIAADLQQLTKVTAP
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLLGQKFLGGAPSSPWPPTKTITFYPQPRPLPQFSLRQSDGTQLVPGELKGHWTLVFLGF
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEH
TFCPDVCPTTLTDLAVAQQQWEAIPDGLRPRVLFVSVDPQRDPPARLGEYAHAFHKDTLA
HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
ATADVPALERFATALGFVFQKVPGKGYAQNPNDYSMDHSAGIAVLDPQGRLAGLIRPPLD
HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCC
PKAIAADLQQLTKVTAP
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226670 [H]